C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001WX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000187010-ENSG00000183726 CGP 9606 1:25272393-25362361
GeneTranscriptPositionBiotype
ENSG00000117616 (RSRP1)
arginine/serine-rich protein 1 		ENST00000243189 (RSRP1-001) 25242237-25247519 protein_coding
ENST00000431849 (RSRP1-201) 25244072-25247446 protein_coding
ENST00000450820 (RSRP1-021) 25253114-25267885 processed_transcript
ENST00000473314 (RSRP1-002) 25242256-25338165 nonsense_mediated_decay
ENST00000475766 (RSRP1-015) 25242363-25246016 processed_transcript
ENST00000491378 (RSRP1-005) 25244071-25245208 retained_intron
ENST00000498238 (RSRP1-003) 25242249-25247454 retained_intron
ENST00000561867 (RSRP1-020) 25246676-25338100 protein_coding
ENST00000562018 (RSRP1-006) 25304683-25337411 processed_transcript
ENST00000564223 (RSRP1-017) 25242291-25243654 processed_transcript
ENST00000564413 (RSRP1-007) 25335846-25337218 processed_transcript
ENST00000565733 (RSRP1-014) 25242255-25246640 nonsense_mediated_decay
ENST00000566395 (RSRP1-004) 25242255-25246535 nonsense_mediated_decay
ENST00000566599 (RSRP1-022) 25335368-25338190 processed_transcript
ENST00000567741 (RSRP1-009) 25304796-25337401 processed_transcript
ENST00000568212 (RSRP1-013) 25244999-25247454 retained_intron
ENST00000568254 (RSRP1-010) 25242255-25247457 nonsense_mediated_decay
ENST00000568399 (RSRP1-008) 25304387-25337233 processed_transcript
ENST00000568701 (RSRP1-019) 25246577-25267915 protein_coding
ENST00000568996 (RSRP1-018) 25246695-25338213 protein_coding
ENST00000569495 (RSRP1-016) 25242249-25244105 processed_transcript
ENST00000570063 (RSRP1-012) 25242278-25246627 retained_intron
ENSG00000183726 (TMEM50A)
transmembrane protein 50A 		ENST00000374358 (TMEM50A-001) 25337917-25362361 protein_coding
ENST00000468704 (TMEM50A-005) 25338460-25356853 processed_transcript
ENST00000480937 (TMEM50A-004) 25338323-25361279 processed_transcript
ENST00000487234 (TMEM50A-006) 25342592-25351654 processed_transcript
ENST00000491936 (TMEM50A-003) 25338320-25361265 processed_transcript
ENST00000498135 (TMEM50A-002) 25338317-25360967 processed_transcript
ENSG00000224183 (SDHDP6)
succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 6 		ENST00000414693 (SDHDP6-001) 25294164-25294643 processed_pseudogene
CIL_0001WX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028825-ENSMUSG00000028822 CGP 10090 4:134864536-134915024
GeneTranscriptPositionBiotype
ENSMUSG00000028822 (Tmem50a)
transmembrane protein 50A 		ENSMUST00000030626 (Tmem50a-001) 134897849-134915024 protein_coding
ENSMUST00000105863 (Tmem50a-002) 134898391-134915015 protein_coding
ENSMUSG00000028825 (Rhd)
Rh blood group, D antigen 		ENSMUST00000030627 (Rhd-001) 134864536-134896172 protein_coding
ENSMUST00000136163 (Rhd-002) 134879810-134890306 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001WX_0001ENSG00000117616ENST00000243189ENST00000431849ENST00000450820ENST00000473314ENST00000475766ENST00000491378ENST00000498238ENST00000561867ENST00000562018ENST00000564223ENST00000564413ENST00000565733ENST00000566395ENST00000566599ENST00000567741ENST00000568212ENST00000568254ENST00000568399ENST00000568701ENST00000568996ENST00000569495ENST00000570063ENSG00000183726ENST00000374358ENST00000468704ENST00000480937ENST00000487234ENST00000491936ENST00000498135ENSG00000224183ENST00000414693CIL_0001WX_0002ENSMUSG00000028822ENSMUST00000030626ENSMUST00000105863ENSMUSG00000028825ENSMUST00000030627ENSMUST00000136163
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001WX_0001ENSG00000117616ENST00000243189ENST00000431849ENST00000473314ENST00000498238ENST00000565733ENST00000568212ENST00000568254ENSG00000183726ENST00000374358ENST00000468704ENST00000498135ENSG00000224183ENST00000414693CIL_0001WX_0002ENSMUSG00000028822ENSMUST00000030626ENSMUST00000105863ENSMUSG00000028825ENSMUST00000030627ENSMUST00000136163
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000117616 ENST00000243189 N/A N/A N/A N/A N/A 24.882±0.00 2.047±0.00 N/A N/A 42.430±0.00 5.752±0.00 N/A N/A 12.907±0.00
ENST00000431849 N/A N/A 4.246±0.00 N/A N/A 14.160±0.00 2.220±0.00 9.343±0.00 6.489±0.00 11.021±0.00 1.090±0.00 17.115±0.00 N/A 11.589±0.00
ENST00000450820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473314 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.807±0.00 N/A N/A N/A
ENST00000475766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498238 N/A N/A N/A 7.484±0.00 4.634±0.00 6.578±0.00 2.391±1.44 14.850±0.00 1.974±0.00 N/A N/A 9.157±4.36 N/A N/A
ENST00000561867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.572±0.00
ENST00000566395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566599 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.268±0.00
ENST00000568254 N/A N/A N/A N/A 5.503±0.00 N/A N/A N/A N/A N/A N/A 14.441±0.00 N/A N/A
ENST00000568399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183726 ENST00000374358 13.305±0.00 28.797±0.00 5.597±0.00 12.564±0.00 11.116±3.70 12.234±1.57 2.133±0.00 4.817±0.00 5.807±0.00 10.118±0.00 N/A 15.368±5.31 10.805±2.19 6.709±0.00
ENST00000468704 54.795±0.00 N/A N/A 29.618±0.00 53.947±0.00 55.100±0.00 N/A N/A 11.666±0.00 N/A 12.538±0.00 N/A N/A 40.920±0.00
ENST00000480937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498135 75.674±0.00 70.510±0.00 N/A 26.635±0.00 41.077±12.34 72.746±0.00 15.363±9.07 49.868±0.00 18.617±3.29 59.249±0.00 22.068±0.00 53.892±30.40 50.551±10.64 41.474±9.07
ENSG00000224183 ENST00000414693 0.126±0.00 0.086±0.00 N/A 0.050±0.00 N/A 0.244±0.00 N/A N/A N/A 0.040±0.00 N/A 0.594±0.00 0.166±0.00 0.179±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028822 ENSMUST00000030626 58.593±10.62 63.532±4.40 71.653±6.23 28.493±5.05 43.530±12.15 23.740±3.83 33.377±3.82 46.060±9.09 46.854±7.79 67.025±3.52 20.054±0.88 33.987±10.56 24.382±9.28 5.923±2.32
ENSMUST00000105863 20.465±2.76 95.272±8.04 N/A 37.553±0.00 36.590±6.68 17.629±2.44 11.267±1.96 13.978±2.04 13.540±1.46 28.510±4.99 N/A 42.261±6.60 24.490±3.28 2.761±0.43
ENSMUSG00000028825 ENSMUST00000030627 0.031±0.01 0.079±0.04 0.155±0.00 0.094±0.07 0.029±0.01 0.066±0.03 0.879±0.38 0.038±0.03 212.927±101.91 0.067±0.00 0.064±0.03 0.888±0.54 3.959±2.78 0.145±0.09
ENSMUST00000136163 0.111±0.04 0.105±0.00 N/A N/A 0.089±0.06 0.048±0.00 N/A 0.053±0.00 N/A N/A N/A 0.355±0.00 0.133±0.00 0.223±0.06

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