C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 35kDa (U11/U12)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184209 SNRNP35 9606 + 12:123457641-123473154 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350887 SNRNP35-003 123464506-123466390 protein_coding
  ENST00000412157 SNRNP35-002 123459523-123466299 protein_coding
  ENST00000526639 SNRNP35-001 123457641-123466936 protein_coding
  ENST00000527158 SNRNP35-004 123458119-123473154 processed_transcript
  ENST00000529201 SNRNP35-007 123458127-123464899 processed_transcript
  ENST00000529904 SNRNP35-005 123458088-123459216 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350887ENST00000526639
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350887 10.624±0.00 24.771±0.00 14.418±0.00 18.277±0.00 11.635±0.00 14.911±0.00 14.375±0.00 11.276±0.00 8.472±0.00 33.467±0.00 16.832±5.42 21.820±4.53 14.615±7.87
ENST00000526639 N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.601±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J3 CIL_0003J3_0001 CGP 12:123410683-123473154
CIL_0003J2 CIL_0003J2_0001 CGP 12:123457641-123533718

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008380 IC RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044426 snrnp35 small nuclear ribonucleoprotein 35 (U11/U12) protein_coding Danio_rerio
ENSMUSG00000029402 Snrnp35 small nuclear ribonucleoprotein 35 (U11/U12) protein_coding Mus_musculus
ENSMUSG00000031998 1700128F08Rik RIKEN cDNA 1700128F08 gene protein_coding Mus_musculus

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