C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein 35 (U11/U12)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029402 Snrnp35 10090 + 5:124483134-124491124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031349 Snrnp35-001 124483134-124491124 protein_coding
  ENSMUST00000111453 Snrnp35-002 124483458-124491107 protein_coding
  ENSMUST00000136567 Snrnp35-003 124483202-124490490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031349ENSMUST00000111453ENSMUST00000136567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031349 2.099±0.67 0.353±0.14 2.614±0.18 6.704±3.80 0.719±0.23 1.524±0.57 1.534±0.48 1.974±0.60 3.020±2.68 2.270±0.56 8.616±1.09 2.848±3.56 12.915±7.37 12.819±7.42
ENSMUST00000111453 1.305±0.11 1.129±0.08 0.799±0.12 2.864±0.00 0.843±0.26 0.507±0.18 0.713±0.17 1.187±0.48 0.679±0.16 0.632±0.17 3.505±0.85 1.351±0.67 1.037±0.01 17.715±8.03
ENSMUST00000136567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.842±0.00 6.318±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J3 CIL_0003J3_0002 CGP 5:124463265-124491124
CIL_0003J2 CIL_0003J2_0002 CGP 5:124483134-124531391

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008150 ND biological_process
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044426 snrnp35 small nuclear ribonucleoprotein 35 (U11/U12) protein_coding Danio_rerio
ENSG00000184209 SNRNP35 small nuclear ribonucleoprotein 35kDa (U11/U12) protein_coding Homo_sapiens

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