C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein O
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184831 APOO 9606 - X:23833353-23907934 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000379226 APOO-002 23833353-23907934 protein_coding
  ENST00000439528 APOO-001 23833363-23880901 protein_coding
  ENST00000476598 APOO-004 23833360-23840405 processed_transcript
  ENST00000490078 APOO-003 23833367-23907903 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379226ENST00000439528ENST00000476598ENST00000490078
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379226 N/A 0.788±0.00 5.615±1.19 1.749±0.00 2.125±1.72 8.164±5.94 6.632±5.90 1.029±0.49 2.363±1.85 2.628±0.00 6.249±1.75 1.793±0.36 11.504±0.00
ENST00000439528 1.152±0.00 2.372±0.00 16.525±6.71 3.079±2.58 2.538±0.78 7.170±3.94 5.777±3.26 2.516±0.00 1.390±0.00 3.851±0.00 9.721±3.11 7.397±0.41 7.544±4.07
ENST00000476598 N/A N/A N/A N/A N/A N/A N/A 2.068±0.07 N/A N/A N/A N/A N/A
ENST00000490078 N/A 1.661±0.00 4.809±0.00 N/A N/A N/A N/A N/A 2.159±0.00 1.276±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WD CIL_0002WD_0002 CGP X:23783158-23907934

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 ISS extracellular space
GO:0005739 IDA mitochondrion
GO:0006869 IEA lipid transport
GO:0016021 IEA integral component of membrane
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034362 IEA low-density lipoprotein particle
GO:0034364 IEA high-density lipoprotein particle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026444 apoob apolipoprotein O, b protein_coding Danio_rerio
ENSDARG00000046154 apooa apolipoprotein O, a protein_coding Danio_rerio
ENSMUSG00000049233 Apoo-ps apolipoprotein O, pseudogene protein_coding Mus_musculus
ENSMUSG00000079508 Apoo apolipoprotein O protein_coding Mus_musculus

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