C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185024 BRF1 9606 - 14:105209286-105315589 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327359 BRF1-009 105210278-105315490 protein_coding
  ENST00000379932 BRF1-201 105209429-105247193 protein_coding
  ENST00000379937 BRF1-010 105209286-105300725 protein_coding
  ENST00000392557 BRF1-001 105209286-105247894 protein_coding
  ENST00000440513 BRF1-008 105210367-105315589 protein_coding
  ENST00000446501 BRF1-011 105209289-105249404 protein_coding
  ENST00000546417 BRF1-016 105226123-105300468 protein_coding
  ENST00000546474 BRF1-002 105209286-105315589 protein_coding
  ENST00000546997 BRF1-026 105210078-105213428 retained_intron
  ENST00000547052 BRF1-020 105218998-105222152 retained_intron
  ENST00000547374 BRF1-014 105209289-105221820 retained_intron
  ENST00000547530 BRF1-013 105209289-105222545 protein_coding
  ENST00000547562 BRF1-023 105217633-105228270 protein_coding
  ENST00000548421 BRF1-012 105256186-105301278 protein_coding
  ENST00000549044 BRF1-021 105217213-105220128 processed_transcript
  ENST00000549655 BRF1-018 105221648-105242605 protein_coding
  ENST00000550208 BRF1-019 105228861-105248911 protein_coding
  ENST00000550375 BRF1-022 105241305-105248539 protein_coding
  ENST00000550692 BRF1-015 105252515-105315589 protein_coding
  ENST00000551787 BRF1-007 105209429-105247193 protein_coding
  ENST00000552127 BRF1-017 105221885-105249392 protein_coding
  ENST00000619151 BRF1-202 105209496-105300992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverOvaryPlacentaENST00000379937ENST00000392557ENST00000547562
Transcript ID Colon Kidney Liver Ovary Placenta
ENST00000379937 N/A 1.383±0.00 N/A 13.316±0.00 8.135±1.31
ENST00000392557 2.127±0.00 N/A 2.021±0.00 N/A N/A
ENST00000547562 N/A 1.461±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KK CIL_0001KK_0001 CGP 14:105172938-105315589
CIL_0005IK CIL_0005IK_0003 CGP 14:105209286-105315589

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000126 IEA:NAS transcription factor TFIIIB complex
GO:0005654 TAS nucleoplasm
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006383 TAS transcription from RNA polymerase III promoter
GO:0006384 IEA transcription initiation from RNA polymerase III promoter
GO:0008270 IEA zinc ion binding
GO:0009303 TAS rRNA transcription
GO:0009304 TAS tRNA transcription
GO:0010467 TAS gene expression
GO:0017025 IEA TBP-class protein binding
GO:0043488 IEA regulation of mRNA stability

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005002 brf1b BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIBb protein_coding Danio_rerio
ENSDARG00000017835 brf1a BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIBa protein_coding Danio_rerio
ENSMUSG00000011158 Brf1 BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) protein_coding Mus_musculus

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