C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SP140 nuclear body protein-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185404 SP140L 9606 + 2:230327184-230403732 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243810 SP140L-201 230327270-230403730 protein_coding
  ENST00000396563 SP140L-202 230327270-230403730 protein_coding
  ENST00000415673 SP140L-009 230327184-230403732 protein_coding
  ENST00000444636 SP140L-004 230327184-230400624 protein_coding
  ENST00000458341 SP140L-001 230342070-230372744 protein_coding
  ENST00000462156 SP140L-003 230385241-230388786 retained_intron
  ENST00000466656 SP140L-006 230399821-230400477 retained_intron
  ENST00000483728 SP140L-002 230370906-230403730 retained_intron
  ENST00000496870 SP140L-005 230391715-230401053 retained_intron
  ENST00000497212 SP140L-007 230401131-230402888 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000243810ENST00000396563ENST00000415673ENST00000444636ENST00000458341ENST00000483728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000243810 1.015±0.00 N/A N/A N/A 2.599±0.00 2.595±0.00 0.460±0.00 0.907±0.00 0.617±0.00 0.714±0.00 N/A 3.823±0.00 2.448±0.09 0.701±0.00
ENST00000396563 0.957±0.00 3.952±0.00 0.480±0.00 0.362±0.00 N/A N/A N/A N/A 0.388±0.00 2.068±0.00 N/A 1.143±0.00 N/A N/A
ENST00000415673 1.237±0.00 6.774±0.00 0.320±0.00 0.299±0.00 1.526±0.11 0.706±0.02 0.875±0.00 1.129±0.00 0.627±0.00 1.860±0.00 0.938±0.69 2.282±1.28 2.828±0.19 0.423±0.00
ENST00000444636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.126±0.00 0.476±0.00
ENST00000458341 N/A N/A N/A 0.155±0.02 0.784±0.00 0.784±0.00 N/A 0.643±0.00 N/A 2.177±0.00 N/A N/A N/A 0.510±0.00
ENST00000483728 N/A 2.961±0.00 N/A 0.072±0.00 0.453±0.00 N/A N/A 0.593±0.00 0.203±0.00 0.726±0.00 N/A 1.023±0.34 N/A 0.845±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0002 CGP 2:230203110-230403732
CIL_0004AU CIL_0004AU_0004 CGP 2:230327184-230544090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio

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