C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SP140 nuclear body protein-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243810 SP140L-201 ENSG00000185404 9606 + 2:230327270-230403730 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000243810
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000243810 1.015±0.00 2.599±0.00 2.595±0.00 0.460±0.00 0.907±0.00 0.617±0.00 0.714±0.00 3.823±0.00 2.448±0.09 0.701±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0002 CGP 2:230203110-230403732
CIL_0004AU CIL_0004AU_0004 CGP 2:230327184-230544090

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072767 Arhgef12-201 protein_coding Mus_musculus 0 420
ENSMUST00000165665 Arhgef12-202 protein_coding Mus_musculus 0 420
ENSMUST00000189121 RP23-6O16.1-001 unprocessed_pseudogene Mus_musculus 0 407
ENSMUST00000080204 Sp140-001 protein_coding Mus_musculus 0 405
ENSMUST00000160010 Gm7281-001 unprocessed_pseudogene Mus_musculus 0 368
ENSMUST00000162896 Gm6264-001 transcribed_unprocessed_pseudogene Mus_musculus 0 263
ENSMUST00000186987 RP23-76P9.2-001 unprocessed_pseudogene Mus_musculus 0 261
ENSMUST00000160119 Sp140-006 retained_intron Mus_musculus 9e-37 159
ENSMUST00000160487 Gm2389-001 unprocessed_pseudogene Mus_musculus 6e-24 117
ENSMUST00000161497 Sp140-004 protein_coding Mus_musculus 1e-21 110
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.000000006 68

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