C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SP140 nuclear body protein-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483728 SP140L-002 ENSG00000185404 9606 + 2:230370906-230403730 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverLungOvaryTestisENST00000483728
Transcript ID Adrenal Brain Breast Kidney Liver Lung Ovary Testis
ENST00000483728 2.961±0.00 0.072±0.00 0.453±0.00 0.593±0.00 0.203±0.00 0.726±0.00 1.023±0.34 0.845±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0002 CGP 2:230203110-230403732
CIL_0004AU CIL_0004AU_0004 CGP 2:230327184-230544090

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160010 Gm7281-001 unprocessed_pseudogene Mus_musculus 0 257
ENSMUST00000072767 Arhgef12-201 protein_coding Mus_musculus 0 239
ENSMUST00000165665 Arhgef12-202 protein_coding Mus_musculus 0 239
ENSMUST00000080204 Sp140-001 protein_coding Mus_musculus 0 239
ENSMUST00000189121 RP23-6O16.1-001 unprocessed_pseudogene Mus_musculus 0 235
ENSMUST00000162896 Gm6264-001 transcribed_unprocessed_pseudogene Mus_musculus 0 219
ENSMUST00000160119 Sp140-006 retained_intron Mus_musculus 1e-36 159
ENSMUST00000186987 RP23-76P9.2-001 unprocessed_pseudogene Mus_musculus 4e-26 124
ENSMUST00000160487 Gm2389-001 unprocessed_pseudogene Mus_musculus 7e-24 117
ENSMUST00000161497 Sp140-004 protein_coding Mus_musculus 1e-21 110
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.000000007 68

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