C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycomb group ring finger 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185619 PCGF3 9606 + 4:705748-770640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000362003 PCGF3-001 705765-770640 protein_coding
  ENST00000400151 PCGF3-009 705784-734479 protein_coding
  ENST00000419774 PCGF3-007 705748-734943 protein_coding
  ENST00000427463 PCGF3-012 705784-735009 protein_coding
  ENST00000430644 PCGF3-003 705832-766599 nonsense_mediated_decay
  ENST00000433814 PCGF3-005 725107-743538 protein_coding
  ENST00000440452 PCGF3-002 705943-767864 nonsense_mediated_decay
  ENST00000470161 PCGF3-004 705784-766608 protein_coding
  ENST00000475288 PCGF3-006 705782-731345 retained_intron
  ENST00000482726 PCGF3-008 705784-734842 processed_transcript
  ENST00000484141 PCGF3-011 705875-737540 retained_intron
  ENST00000488032 PCGF3-010 743865-761364 processed_transcript
  ENST00000505655 PCGF3-201 731076-767031 protein_coding
  ENST00000620529 PCGF3-202 768189-770087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000362003ENST00000440452ENST00000470161ENST00000505655ENST00000620529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000362003 1.962±0.00 2.531±0.00 N/A 3.170±0.00 1.452±0.00 1.893±0.00 1.353±0.00 1.868±0.91 N/A N/A N/A 2.338±0.93 1.774±0.00 2.772±0.00
ENST00000440452 2.332±0.00 2.827±0.00 N/A N/A 1.640±0.00 2.591±0.00 0.650±0.00 N/A N/A 2.451±0.00 N/A 3.412±0.00 1.394±0.06 N/A
ENST00000470161 N/A N/A 3.133±0.00 3.398±0.00 N/A N/A 3.119±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000505655 N/A N/A N/A 2.306±0.00 N/A 3.607±0.00 N/A N/A 3.940±0.00 N/A 1.343±0.47 6.630±0.00 2.803±0.12 8.330±0.00
ENST00000620529 4.179±0.00 4.597±0.00 N/A 4.758±0.00 5.037±0.00 3.122±0.00 1.649±0.24 3.700±0.00 2.079±0.00 5.791±0.00 1.372±0.09 7.507±4.21 4.082±1.23 7.646±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CG CIL_0006CG_0001 CGP 4:681829-770640
CIL_0006LT CIL_0006LT_0001 CGP 4:705748-826198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000033623 Pcgf3 polycomb group ring finger 3 protein_coding Mus_musculus

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