C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000362003 PCGF3-001 ENSG00000185619 9606 + 4:705765-770640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000362003
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000362003 1.962±0.00 2.531±0.00 3.170±0.00 1.452±0.00 1.893±0.00 1.353±0.00 1.868±0.91 2.338±0.93 1.774±0.00 2.772±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CG CIL_0006CG_0001 CGP 4:681829-770640
CIL_0006LT CIL_0006LT_0001 CGP 4:705748-826198

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046975 Pcgf3-001 protein_coding Mus_musculus 0 1284
ENSMUST00000112597 Pcgf3-002 protein_coding Mus_musculus 0 896
ENSMUST00000138264 Pcgf3-003 processed_transcript Mus_musculus 0 405
ENSDART00000123484 CABZ01086927.1-201 protein_coding Danio_rerio 4e-24 119

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