C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel, voltage-sensitive Ka
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186510 CLCNKA 9606 + 1:16018875-16034050 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331433 CLCNKA-001 16022052-16034050 protein_coding
  ENST00000375692 CLCNKA-002 16021871-16034050 protein_coding
  ENST00000439316 CLCNKA-007 16022014-16033663 protein_coding
  ENST00000464764 CLCNKA-003 16018875-16034050 processed_transcript
  ENST00000477360 CLCNKA-006 16021030-16021737 processed_transcript
  ENST00000491433 CLCNKA-005 16026839-16030075 processed_transcript
  ENST00000495784 CLCNKA-004 16021913-16026596 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000331433ENST00000375692ENST00000439316ENST00000464764ENST00000491433ENST00000495784
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000331433 N/A 0.070±0.00 1.863±0.00 N/A N/A 0.080±0.00 0.046±0.00 16.654±0.00 0.056±0.00 N/A 0.041±0.00 0.075±0.00 N/A
ENST00000375692 N/A N/A 3.821±0.00 N/A N/A N/A N/A 16.965±0.00 N/A 0.024±0.00 0.099±0.00 0.032±0.00 0.339±0.00
ENST00000439316 0.012±0.00 N/A N/A 0.057±0.03 0.097±0.00 N/A N/A 28.173±0.00 N/A N/A 0.055±0.04 N/A 0.446±0.00
ENST00000464764 N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.111±0.06 N/A 0.138±0.00
ENST00000491433 N/A N/A 8.682±0.00 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495784 N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A 0.347±0.00 N/A 0.254±0.22 0.037±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0001 VISTA 1:15548708-16149793
CIL_00022U CIL_00022U_0002 CGP 1:16014028-16034050
CIL_0001WZ CIL_0001WZ_0001 CGP 1:16018875-16057308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0007588 TAS excretion
GO:0016020 IEA membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0046872 IEA metal ion binding
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022560 clcnk chloride channel K protein_coding Danio_rerio
ENSMUSG00000006216 Clcnkb chloride channel Kb protein_coding Mus_musculus
ENSMUSG00000033770 Clcnka chloride channel Ka protein_coding Mus_musculus

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