C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel, voltage-sensitive Ka
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000439316 CLCNKA-007 ENSG00000186510 9606 + 1:16022014-16033663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyOvaryTestisENST00000439316
Transcript ID Adipose Brain Breast Kidney Ovary Testis
ENST00000439316 0.012±0.00 0.057±0.03 0.097±0.00 28.173±0.00 0.055±0.04 0.446±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0001 VISTA 1:15548708-16149793
CIL_00022U CIL_00022U_0002 CGP 1:16014028-16034050
CIL_0001WZ CIL_0001WZ_0001 CGP 1:16018875-16057308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0007588 TAS excretion
GO:0016020 IEA membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0046872 IEA metal ion binding
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042617 Clcnka-001 protein_coding Mus_musculus 0 1568
ENSMUST00000105790 Clcnka-002 protein_coding Mus_musculus 0 1568
ENSMUST00000006378 Clcnkb-001 protein_coding Mus_musculus 0 1496
ENSMUST00000105788 Clcnkb-002 protein_coding Mus_musculus 0 1450
ENSMUST00000133676 Clcnka-003 protein_coding Mus_musculus 0 220

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