C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chloride channel Ka
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033770 Clcnka 10090 - 4:141384610-141398724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042617 Clcnka-001 141384610-141398724 protein_coding
  ENSMUST00000105790 Clcnka-002 141384610-141398204 protein_coding
  ENSMUST00000133676 Clcnka-003 141395119-141398574 protein_coding
  ENSMUST00000150334 Clcnka-004 141391396-141394827 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000042617ENSMUST00000105790ENSMUST00000133676ENSMUST00000150334
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000042617 0.039±0.02 0.025±0.02 0.117±0.02 0.043±0.01 0.011±0.00 35.570±3.03 0.010±0.01 0.259±0.08 0.048±0.00 0.020±0.00 0.064±0.03
ENSMUST00000105790 N/A 0.002±0.00 N/A N/A N/A 4.715±0.88 N/A N/A N/A N/A N/A
ENSMUST00000133676 N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.019±0.00 N/A
ENSMUST00000150334 N/A N/A 0.107±0.01 N/A 0.026±0.00 N/A N/A N/A 0.160±0.00 N/A 0.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0002 VISTA 4:141236761-141837859
CIL_0001WZ CIL_0001WZ_0002 CGP 4:141384610-141416014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005515 IPI protein binding
GO:0006821 IEA chloride transport
GO:0016323 IDA basolateral plasma membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0046872 IEA metal ion binding
GO:0050878 IMP regulation of body fluid levels
GO:0072053 IMP renal inner medulla development
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022560 clcnk chloride channel K protein_coding Danio_rerio
ENSG00000184908 CLCNKB chloride channel, voltage-sensitive Kb protein_coding Homo_sapiens
ENSG00000186510 CLCNKA chloride channel, voltage-sensitive Ka protein_coding Homo_sapiens

Loading