C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fascin actin-bundling protein 2, retinal
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186765 FSCN2 9606 + 17:81528396-81537130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334850 FSCN2-003 81528532-81537080 protein_coding
  ENST00000417245 FSCN2-001 81528396-81537130 protein_coding
  ENST00000527221 FSCN2-002 81536146-81536956 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000334850ENST00000417245ENST00000527221
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000334850 N/A 0.626±0.00 0.185±0.00 0.091±0.05 N/A 0.100±0.00 0.564±0.00 0.536±0.00 0.066±0.00 0.599±0.58 0.161±0.00 N/A
ENST00000417245 N/A N/A N/A N/A 0.037±0.00 N/A N/A 0.071±0.00 0.302±0.00 0.362±0.21 0.043±0.00 0.212±0.04
ENST00000527221 0.043±0.00 N/A 0.120±0.00 0.072±0.00 0.145±0.00 N/A N/A N/A N/A 0.240±0.00 N/A 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BP CIL_0003BP_0001 CGP 17:81528396-81553961

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005737 IEA cytoplasm
GO:0007601 TAS visual perception
GO:0009653 TAS anatomical structure morphogenesis
GO:0015629 ISS actin cytoskeleton
GO:0030036 ISS actin cytoskeleton organization
GO:0030674 IEA protein binding, bridging
GO:0032420 IEA stereocilium
GO:0042462 IEA eye photoreceptor cell development
GO:0051015 ISS:IEA actin filament binding
GO:0051017 TAS actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059574 fscn2a fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) a protein_coding Danio_rerio
ENSDARG00000074396 fscn2b fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) b protein_coding Danio_rerio
ENSMUSG00000025380 Fscn2 fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) protein_coding Mus_musculus

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