C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fascin actin-bundling protein 2, retinal
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334850 FSCN2-003 ENSG00000186765 9606 + 17:81528532-81537080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungOvaryPlacentaENST00000334850
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta
ENST00000334850 0.626±0.00 0.185±0.00 0.091±0.05 0.100±0.00 0.564±0.00 0.536±0.00 0.066±0.00 0.599±0.58 0.161±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BP CIL_0003BP_0001 CGP 17:81528396-81553961

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005737 IEA cytoplasm
GO:0007601 TAS visual perception
GO:0009653 TAS anatomical structure morphogenesis
GO:0015629 ISS actin cytoskeleton
GO:0030036 ISS actin cytoskeleton organization
GO:0030674 IEA protein binding, bridging
GO:0032420 IEA stereocilium
GO:0042462 IEA eye photoreceptor cell development
GO:0051015 ISS:IEA actin filament binding
GO:0051017 TAS actin filament bundle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026445 Fscn2-001 protein_coding Mus_musculus 0 1275
ENSMUST00000152556 Fscn2-002 processed_transcript Mus_musculus 0 359
ENSMUST00000130476 Fscn2-003 processed_transcript Mus_musculus 0 274

Loading