C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025380 Fscn2 10090 + 11:120361534-120368168 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026445 Fscn2-001 120361534-120368168 protein_coding
  ENSMUST00000130476 Fscn2-003 120366713-120367820 processed_transcript
  ENSMUST00000152556 Fscn2-002 120366542-120367948 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026445ENSMUST00000130476ENSMUST00000152556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026445 0.031±0.02 0.134±0.04 0.070±0.02 0.157±0.09 0.068±0.02 0.057±0.01 0.060±0.02 0.086±0.05 0.026±0.01 0.107±0.10 0.646±0.16 0.226±0.10 0.108±0.03 0.259±0.18
ENSMUST00000130476 0.080±0.03 N/A 0.061±0.00 0.176±0.03 0.140±0.01 0.096±0.00 0.114±0.07 0.048±0.00 0.034±0.02 0.160±0.03 N/A 0.204±0.05 0.147±0.07 0.040±0.00
ENSMUST00000152556 0.064±0.00 N/A N/A 0.142±0.04 N/A 0.147±0.05 0.153±0.05 0.157±0.05 0.114±0.04 N/A 0.684±0.00 0.206±0.07 0.303±0.28 1.068±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BP CIL_0003BP_0002 CGP 11:120361534-120378764

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005737 IEA cytoplasm
GO:0015629 IDA actin cytoskeleton
GO:0030036 ISS actin cytoskeleton organization
GO:0030674 IEA protein binding, bridging
GO:0032420 IDA stereocilium
GO:0042462 IMP eye photoreceptor cell development
GO:0051015 ISS actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059574 fscn2a fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) a protein_coding Danio_rerio
ENSDARG00000074396 fscn2b fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus) b protein_coding Danio_rerio
ENSG00000186765 FSCN2 fascin actin-bundling protein 2, retinal protein_coding Homo_sapiens

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