C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EF-hand calcium binding domain 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186976 EFCAB6 9606 - 22:43528744-43812337 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262726 EFCAB6-010 43528744-43812277 protein_coding
  ENST00000356087 EFCAB6-003 43716671-43812305 protein_coding
  ENST00000396231 EFCAB6-001 43528744-43812190 protein_coding
  ENST00000404038 EFCAB6-002 43683664-43812337 retained_intron
  ENST00000461800 EFCAB6-005 43528744-43570143 processed_transcript
  ENST00000468552 EFCAB6-004 43551846-43672270 retained_intron
  ENST00000476600 EFCAB6-007 43765305-43812253 processed_transcript
  ENST00000477145 EFCAB6-009 43528780-43532061 processed_transcript
  ENST00000483324 EFCAB6-008 43528778-43533505 processed_transcript
  ENST00000485142 EFCAB6-006 43782210-43812274 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262726ENST00000356087ENST00000396231ENST00000404038ENST00000461800ENST00000468552ENST00000477145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262726 N/A N/A N/A 0.120±0.00 N/A 0.120±0.00 0.099±0.00 N/A N/A 0.527±0.00 N/A 0.282±0.00 N/A 7.616±2.44
ENST00000356087 N/A N/A N/A N/A 0.513±0.00 N/A 0.211±0.00 N/A N/A N/A N/A 0.551±0.00 0.121±0.00 N/A
ENST00000396231 0.044±0.00 N/A N/A 0.662±0.49 0.190±0.00 0.207±0.00 0.036±0.00 0.178±0.00 N/A N/A 0.008±0.00 0.479±0.26 0.040±0.01 14.005±8.93
ENST00000404038 N/A N/A N/A 0.804±0.42 0.190±0.00 N/A N/A N/A N/A 0.974±0.00 N/A 0.055±0.00 N/A N/A
ENST00000461800 N/A N/A N/A N/A N/A N/A N/A 0.316±0.00 0.066±0.00 N/A 0.083±0.00 0.858±0.00 0.022±0.00 17.554±5.42
ENST00000468552 N/A 0.113±0.00 0.073±0.00 0.136±0.00 0.134±0.01 0.035±0.00 0.058±0.00 N/A 0.023±0.00 0.112±0.00 0.018±0.00 0.064±0.00 N/A N/A
ENST00000477145 N/A N/A N/A N/A N/A 0.462±0.00 N/A N/A N/A N/A N/A N/A 0.156±0.04 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W4 CIL_0008W4_0001 VISTA 22:42938962-43540911
CIL_0004UU CIL_0004UU_0001 CGP 22:43411196-43812337
CIL_0004UV CIL_0004UV_0001 CGP 22:43528744-43862503

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092600 EFCAB6 EF-hand calcium binding domain 6 protein_coding Danio_rerio
ENSMUSG00000022441 Efcab6 EF-hand calcium binding domain 6 protein_coding Mus_musculus

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