C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: EF-hand calcium binding domain 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022441 Efcab6 10090 - 15:83866712-84065379 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000122836 Efcab6-004 84018668-84065379 processed_transcript
  ENSMUST00000130551 Efcab6-007 83872372-83883641 processed_transcript
  ENSMUST00000140633 Efcab6-005 83972483-83988982 processed_transcript
  ENSMUST00000143592 Efcab6-002 83866767-83936095 retained_intron
  ENSMUST00000144169 Efcab6-003 83866714-83919477 processed_transcript
  ENSMUST00000149563 Efcab6-006 83965198-83967842 processed_transcript
  ENSMUST00000156187 Efcab6-001 83866712-84065349 protein_coding
  ENSMUST00000163773 Efcab6-008 83924427-83946599 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000130551ENSMUST00000143592ENSMUST00000144169ENSMUST00000149563ENSMUST00000156187ENSMUST00000163773
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000130551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A
ENSMUST00000143592 N/A N/A 0.136±0.03 0.170±0.04 0.074±0.02 N/A N/A 0.230±0.00 2.097±0.51 0.533±0.31 N/A 49.016±7.96
ENSMUST00000144169 0.026±0.01 N/A N/A N/A 0.025±0.00 0.060±0.02 0.004±0.00 0.445±0.07 N/A 0.736±0.33 0.062±0.05 63.190±12.41
ENSMUST00000149563 N/A 0.052±0.00 N/A N/A N/A 0.089±0.03 N/A 1.511±0.00 N/A N/A N/A N/A
ENSMUST00000156187 N/A N/A 0.094±0.00 0.022±0.00 0.016±0.00 0.014±0.00 N/A 0.293±0.14 N/A 0.269±0.17 N/A 7.472±1.18
ENSMUST00000163773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004UU CIL_0004UU_0002 CGP 15:83779467-84065379
CIL_0004UV CIL_0004UV_0002 CGP 15:83866712-84105754

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092600 EFCAB6 EF-hand calcium binding domain 6 protein_coding Danio_rerio
ENSG00000186976 EFCAB6 EF-hand calcium binding domain 6 protein_coding Homo_sapiens

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