C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type IV, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187498 COL4A1 9606 - 13:110148963-110307149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375820 COL4A1-001 110148963-110307149 protein_coding
  ENST00000467182 COL4A1-004 110161018-110163490 retained_intron
  ENST00000474391 COL4A1-003 110161958-110163558 retained_intron
  ENST00000543140 COL4A1-005 110190743-110307131 protein_coding
  ENST00000615732 COL4A1-006 110206661-110298899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375820ENST00000543140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375820 152.829±0.00 53.677±0.00 5.161±0.00 2.110±1.73 80.201±52.63 64.973±55.96 15.291±10.79 10.128±7.53 14.050±9.55 115.204±105.25 9.806±5.04 37.284±21.23 471.781±170.33 19.862±16.53
ENST00000543140 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.657±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077O CIL_00077O_0001 CGP 13:109752698-110307149
CIL_00058N CIL_00058N_0002 CGP 13:110148963-110513027

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001569 IMP patterning of blood vessels
GO:0005201 IMP:IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 IMP collagen type IV trimer
GO:0005604 IC basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0007420 IMP brain development
GO:0007528 IEA neuromuscular junction development
GO:0022617 TAS extracellular matrix disassembly
GO:0030023 IC extracellular matrix constituent conferring elasticity
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0030855 IEA epithelial cell differentiation
GO:0031012 IDA extracellular matrix
GO:0048407 IDA platelet-derived growth factor binding
GO:0048514 IMP blood vessel morphogenesis
GO:0061304 IMP retinal blood vessel morphogenesis
GO:0061333 IMP renal tubule morphogenesis
GO:0071230 IEA cellular response to amino acid stimulus
GO:0071711 IMP basement membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055009 col4a1 collagen, type IV, alpha 1 protein_coding Danio_rerio
ENSMUSG00000031502 Col4a1 collagen, type IV, alpha 1 protein_coding Mus_musculus

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