C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TMEM256-PLSCR3 readthrough (NMD candidate)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000187838 TMEM256-PLSCR3 9606 - 17:7389727-7394843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324822 TMEM256-PLSCR3-001 7389727-7394570 protein_coding
  ENST00000535512 TMEM256-PLSCR3-201 7389730-7394843 protein_coding
  ENST00000571078 TMEM256-PLSCR3-011 7390448-7394274 protein_coding
  ENST00000571541 TMEM256-PLSCR3-007 7389730-7394508 retained_intron
  ENST00000571802 TMEM256-PLSCR3-010 7392846-7394524 protein_coding
  ENST00000573070 TMEM256-PLSCR3-002 7389727-7394842 nonsense_mediated_decay
  ENST00000573213 TMEM256-PLSCR3-009 7392884-7394545 protein_coding
  ENST00000573774 TMEM256-PLSCR3-005 7389730-7394565 retained_intron
  ENST00000574401 TMEM256-PLSCR3-003 7389733-7394807 protein_coding
  ENST00000575434 TMEM256-PLSCR3-013 7390050-7393482 protein_coding
  ENST00000575543 TMEM256-PLSCR3-006 7389735-7394515 retained_intron
  ENST00000576201 TMEM256-PLSCR3-004 7389733-7394535 protein_coding
  ENST00000576362 TMEM256-PLSCR3-008 7389754-7394268 protein_coding
  ENST00000619711 TMEM256-PLSCR3-202 7389730-7394843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324822ENST00000535512ENST00000573213ENST00000574401ENST00000575434ENST00000576362
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324822 11.998±0.00 28.193±0.00 N/A 14.854±0.00 8.666±0.00 N/A N/A N/A N/A N/A 13.878±0.01 12.096±6.36 8.851±0.00
ENST00000535512 6.414±0.00 N/A N/A N/A N/A 4.120±0.00 N/A N/A N/A N/A 10.799±0.00 N/A N/A
ENST00000573213 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.918±0.00 N/A N/A N/A
ENST00000574401 N/A N/A 3.029±0.00 N/A N/A N/A N/A 0.968±0.00 N/A N/A 12.487±0.00 4.824±0.85 N/A
ENST00000575434 16.449±0.00 N/A N/A N/A 11.018±0.00 N/A N/A N/A N/A N/A N/A 9.207±0.00 N/A
ENST00000576362 N/A N/A N/A N/A N/A 4.636±0.00 6.374±5.25 N/A 10.296±9.81 8.488±0.00 14.319±3.98 13.236±4.06 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SR CIL_0006SR_0002 CGP 17:7380534-7394843

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 NAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0005886 NAS plasma membrane
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0017121 NAS phospholipid scrambling
GO:0017124 IEA SH3 domain binding
GO:0017128 NAS phospholipid scramblase activity
GO:0042593 IEA glucose homeostasis
GO:0042632 IEA cholesterol homeostasis
GO:0048306 IPI calcium-dependent protein binding
GO:0071222 IEA cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069432 plscr3b phospholipid scramblase 3b protein_coding Danio_rerio
ENSDARG00000091614 CR848032.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000093078 plscr3a phospholipid scramblase 3a protein_coding Danio_rerio
ENSMUSG00000019461 Plscr3 phospholipid scramblase 3 protein_coding Mus_musculus

Loading