C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COMM domain containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188243 COMMD6 9606 - 13:75525219-75549439 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355801 COMMD6-005 75526436-75537841 protein_coding
  ENST00000377612 COMMD6-006 75526436-75538802 nonsense_mediated_decay
  ENST00000377615 COMMD6-001 75525219-75538802 protein_coding
  ENST00000377619 COMMD6-003 75526436-75537618 protein_coding
  ENST00000406936 COMMD6-201 75525219-75537805 protein_coding
  ENST00000460675 COMMD6-011 75526436-75549428 processed_transcript
  ENST00000464050 COMMD6-008 75529709-75537844 retained_intron
  ENST00000471682 COMMD6-012 75530114-75549439 processed_transcript
  ENST00000477377 COMMD6-010 75529824-75537841 retained_intron
  ENST00000483290 COMMD6-009 75526436-75530504 retained_intron
  ENST00000486516 COMMD6-007 75526436-75537826 processed_transcript
  ENST00000497707 COMMD6-004 75526436-75537841 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355801ENST00000377612ENST00000377615ENST00000377619ENST00000406936ENST00000460675ENST00000483290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355801 22.584±0.00 29.405±0.00 N/A 8.938±1.88 22.016±16.17 12.869±7.96 18.392±9.90 N/A 17.648±3.37 30.615±15.84 11.925±3.17 63.014±32.63 27.963±7.62 21.440±0.78
ENST00000377612 N/A 16.310±0.00 N/A 4.417±0.00 14.511±0.00 55.270±0.00 N/A 33.369±0.00 5.779±0.00 56.835±0.00 N/A 49.058±0.00 N/A 28.546±0.00
ENST00000377615 N/A N/A 1.021±0.00 2.946±0.00 1.810±0.00 0.486±0.00 0.254±0.00 1.730±0.00 3.194±0.00 N/A N/A 1.556±0.00 N/A N/A
ENST00000377619 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.208±0.00 N/A 11.310±0.00
ENST00000406936 N/A N/A N/A 1.380±0.00 N/A N/A N/A 2.955±0.00 N/A 0.571±0.00 N/A 2.359±0.00 N/A N/A
ENST00000460675 21.037±0.00 18.887±0.00 N/A 14.988±0.00 15.814±8.33 21.269±15.78 14.133±11.38 22.431±13.35 14.822±0.49 N/A 7.758±0.00 76.867±62.04 30.051±6.12 22.769±12.34
ENST00000483290 N/A N/A 1.514±0.00 N/A 2.582±0.00 N/A N/A N/A N/A 4.743±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004F CIL_00004F_0001 CGP 13:75284665-75549439
CIL_00004G CIL_00004G_0001 CGP 13:75525219-75606020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0051059 IPI NF-kappaB binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074204 COMMD6 COMM domain containing 6 protein_coding Danio_rerio
ENSMUSG00000075486 Commd6 COMM domain containing 6 protein_coding Mus_musculus

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