C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252211 ZKSCAN3-201 ENSG00000189298 9606 + 6:28349914-28369177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252211
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252211 0.588±0.00 0.603±0.00 0.412±0.00 0.411±0.02 0.437±0.00 0.262±0.11 0.400±0.00 0.618±0.44 0.645±0.21 0.171±0.00 0.646±0.47 0.368±0.07 0.952±0.17

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006914 IEA autophagy
GO:0007040 IMP lysosome organization
GO:0010507 IMP negative regulation of autophagy
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2000773 IMP negative regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 0 1201
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 0 1201
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 0 710
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 0 440
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 0 436
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 0 252
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 0 224
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 0 224
ENSMUST00000110485 Zscan26-001 protein_coding Mus_musculus 3e-39 169
ENSMUST00000161896 Zkscan5-003 nonsense_mediated_decay Mus_musculus 5e-32 145
ENSMUST00000031601 Zkscan5-002 protein_coding Mus_musculus 5e-32 145
ENSMUST00000085671 Zkscan5-001 protein_coding Mus_musculus 5e-32 145
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 8e-30 137
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 8e-30 137
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 8e-30 137
ENSMUST00000094116 Zscan25-201 protein_coding Mus_musculus 8e-30 137
ENSMUST00000074941 Zfp35-001 protein_coding Mus_musculus 1e-23 117
ENSMUST00000068975 Zfp180-201 protein_coding Mus_musculus 4e-23 115
ENSMUST00000172448 Zfp27-201 protein_coding Mus_musculus 7e-21 108
ENSMUST00000159920 Zfp27-002 protein_coding Mus_musculus 7e-21 108
ENSMUST00000053521 Zfp27-003 protein_coding Mus_musculus 7e-21 108
ENSMUST00000161904 Zfp27-004 protein_coding Mus_musculus 7e-21 108
ENSMUST00000162592 Zfp27-001 protein_coding Mus_musculus 7e-21 108
ENSMUST00000033498 Timm17b-001 protein_coding Mus_musculus 0.0000000009 71
ENSMUST00000073924 2810021J22Rik-001 protein_coding Mus_musculus 0.000000003 69
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000000003 69
ENSMUST00000180016 Zfp62-202 protein_coding Mus_musculus 0.00000004 66
ENSMUST00000061757 Zfp62-201 protein_coding Mus_musculus 0.00000004 66
ENSMUST00000136539 Zfp62-010 protein_coding Mus_musculus 0.00000004 66
ENSMUST00000109197 Zfp62-008 protein_coding Mus_musculus 0.00000004 66
ENSMUST00000109198 Zfp62-001 protein_coding Mus_musculus 0.00000004 66
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00002 57

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