C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341464 ZKSCAN3-002 ENSG00000189298 9606 + 6:28349950-28366746 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000341464
Transcript ID Adipose Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000341464 0.333±0.00 0.688±0.04 0.598±0.14 0.146±0.00 0.658±0.00 0.233±0.00 0.512±0.29 0.488±0.13 0.601±0.13

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006914 IEA autophagy
GO:0007040 IMP lysosome organization
GO:0010507 IMP negative regulation of autophagy
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:2000773 IMP negative regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 0 876
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 0 876
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 0 710
ENSMUST00000074941 Zfp35-001 protein_coding Mus_musculus 4e-24 117
ENSMUST00000068975 Zfp180-201 protein_coding Mus_musculus 1e-23 115
ENSMUST00000172448 Zfp27-201 protein_coding Mus_musculus 2e-21 108
ENSMUST00000159920 Zfp27-002 protein_coding Mus_musculus 2e-21 108
ENSMUST00000053521 Zfp27-003 protein_coding Mus_musculus 2e-21 108
ENSMUST00000161904 Zfp27-004 protein_coding Mus_musculus 2e-21 108
ENSMUST00000162592 Zfp27-001 protein_coding Mus_musculus 2e-21 108
ENSMUST00000073924 2810021J22Rik-001 protein_coding Mus_musculus 0.000000001 69
ENSMUST00000180016 Zfp62-202 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000061757 Zfp62-201 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000136539 Zfp62-010 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000109197 Zfp62-008 protein_coding Mus_musculus 0.00000001 66
ENSMUST00000109198 Zfp62-001 protein_coding Mus_musculus 0.00000001 66

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