C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196092 PAX5 9606 - 9:36833275-37034185 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358127 PAX5-001 36833275-37034185 protein_coding
  ENST00000377840 PAX5-002 36840172-37034041 nonsense_mediated_decay
  ENST00000377847 PAX5-012 36840551-37034031 protein_coding
  ENST00000377852 PAX5-003 36840172-37034041 protein_coding
  ENST00000377853 PAX5-004 36840172-37034041 protein_coding
  ENST00000414447 PAX5-013 36840551-37034031 protein_coding
  ENST00000446742 PAX5-008 36840551-37034031 protein_coding
  ENST00000520083 PAX5-016 36922694-36966589 retained_intron
  ENST00000520154 PAX5-007 36840172-37034041 protein_coding
  ENST00000520281 PAX5-005 36840551-37034031 protein_coding
  ENST00000522003 PAX5-009 36840551-37034031 protein_coding
  ENST00000522932 PAX5-015 36840558-37002752 protein_coding
  ENST00000523145 PAX5-010 36840551-37034031 protein_coding
  ENST00000523241 PAX5-006 36840172-37034041 protein_coding
  ENST00000523493 PAX5-011 36840551-37034031 nonsense_mediated_decay
  ENST00000524340 PAX5-014 36840558-37002675 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000358127ENST00000446742ENST00000520083ENST00000520154ENST00000520281ENST00000523145
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000358127 0.012±0.00 11.589±0.00 0.004±0.00 N/A 0.014±0.00 0.018±0.01 0.018±0.00 0.007±0.00 N/A 0.003±0.00 0.005±0.00 0.031±0.00
ENST00000446742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A
ENST00000520083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00
ENST00000520154 N/A N/A N/A 0.576±0.00 0.536±0.00 N/A N/A N/A 0.651±0.00 N/A 0.036±0.00 N/A
ENST00000520281 N/A N/A N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A
ENST00000523145 N/A N/A N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K6 CIL_0006K6_0001 CGP 9:36572862-37034185
CIL_0006K7 CIL_0006K7_0001 CGP 9:36833275-37358149

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006959 TAS humoral immune response
GO:0007275 TAS multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007399 IEA nervous system development
GO:0009887 TAS organ morphogenesis
GO:0035914 IEA skeletal muscle cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051573 IEA negative regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037383 pax5 paired box gene 5 protein_coding Danio_rerio
ENSMUSG00000014030 Pax5 paired box 5 protein_coding Mus_musculus

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