C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358127 PAX5-001 ENSG00000196092 9606 - 9:36833275-37034185 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverMuscleOvaryPlacentaENST00000358127
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000358127 0.012±0.00 11.589±0.00 0.004±0.00 0.014±0.00 0.018±0.01 0.018±0.00 0.007±0.00 0.003±0.00 0.005±0.00 0.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K6 CIL_0006K6_0001 CGP 9:36572862-37034185
CIL_0006K7 CIL_0006K7_0001 CGP 9:36833275-37358149

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006959 TAS humoral immune response
GO:0007275 TAS multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007399 IEA nervous system development
GO:0009887 TAS organ morphogenesis
GO:0035914 IEA skeletal muscle cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051573 IEA negative regulation of histone H3-K9 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000014174 Pax5-001 protein_coding Mus_musculus 0 1764
ENSMUST00000102932 Pax5-004 protein_coding Mus_musculus 0 1491
ENSMUST00000172866 Pax5-016 protein_coding Mus_musculus 0 1334
ENSMUST00000107825 Pax5-003 protein_coding Mus_musculus 0 1325
ENSMUST00000173821 Pax5-011 protein_coding Mus_musculus 0 1319
ENSMUST00000107826 Pax5-006 protein_coding Mus_musculus 0 1171
ENSMUST00000107827 Pax5-005 protein_coding Mus_musculus 0 1171
ENSMUST00000143235 Pax5-002 nonsense_mediated_decay Mus_musculus 0 1171
ENSMUST00000174242 Pax5-013 nonsense_mediated_decay Mus_musculus 0 1164
ENSMUST00000174319 Pax5-012 protein_coding Mus_musculus 0 961
ENSMUST00000172949 Pax5-008 processed_transcript Mus_musculus 0 835
ENSMUST00000146335 Pax5-007 protein_coding Mus_musculus 0 832
ENSMUST00000165417 Pax5-009 protein_coding Mus_musculus 0 791
ENSMUST00000134968 Pax5-010 protein_coding Mus_musculus 0 745
ENSMUST00000173733 Pax5-014 protein_coding Mus_musculus 0 671
ENSMUST00000187197 Pax5-015 processed_transcript Mus_musculus 0 527
ENSMUST00000186542 Pax5-019 protein_coding Mus_musculus 0 291
ENSMUST00000174761 Pax5-017 processed_transcript Mus_musculus 0 289
ENSMUST00000191036 Pax5-018 processed_transcript Mus_musculus 0 239

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