C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin XVIIIA
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196535 MYO18A 9606 - 17:29073517-29180412 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000527312 MYO18A-019 29074829-29086801 retained_intron
  ENST00000527372 MYO18A-001 29073519-29180412 protein_coding
  ENST00000528322 MYO18A-012 29121547-29140389 retained_intron
  ENST00000528564 MYO18A-008 29121110-29140418 protein_coding
  ENST00000529578 MYO18A-006 29073517-29091519 processed_transcript
  ENST00000529889 MYO18A-017 29086572-29091093 retained_intron
  ENST00000530254 MYO18A-026 29073521-29140379 nonsense_mediated_decay
  ENST00000530557 MYO18A-014 29093981-29097880 retained_intron
  ENST00000531253 MYO18A-002 29073519-29180364 protein_coding
  ENST00000531267 MYO18A-011 29121853-29127992 processed_transcript
  ENST00000531438 MYO18A-021 29074859-29090160 retained_intron
  ENST00000531892 MYO18A-018 29086460-29090835 processed_transcript
  ENST00000532143 MYO18A-023 29098371-29107667 retained_intron
  ENST00000532867 MYO18A-020 29074748-29079776 processed_transcript
  ENST00000533112 MYO18A-003 29073519-29176752 protein_coding
  ENST00000533399 MYO18A-024 29111786-29114268 retained_intron
  ENST00000533420 MYO18A-010 29121925-29128000 processed_transcript
  ENST00000533652 MYO18A-037 29094243-29097353 retained_intron
  ENST00000546105 MYO18A-016 29074481-29091849 processed_transcript
  ENST00000585573 MYO18A-034 29121851-29165511 processed_transcript
  ENST00000588791 MYO18A-036 29115353-29120675 nonsense_mediated_decay
  ENST00000590242 MYO18A-035 29121030-29140422 processed_transcript
  ENST00000590565 MYO18A-033 29133761-29165481 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000527372ENST00000530254ENST00000531253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000527372 7.709±0.00 N/A 2.759±0.00 6.876±4.18 2.181±0.00 2.063±0.00 2.233±0.00 1.971±0.00 2.220±0.00 1.430±0.00 2.351±0.00 9.409±3.53 4.810±1.00 N/A
ENST00000530254 N/A 2.699±0.00 N/A 8.614±0.00 3.596±0.00 4.779±0.00 5.464±0.00 N/A 7.170±0.00 6.414±0.00 39.378±0.00 6.226±0.00 3.100±0.00 5.657±1.99
ENST00000531253 N/A 3.224±0.00 N/A N/A 2.402±0.00 N/A N/A 3.317±0.00 5.400±0.00 4.515±0.00 N/A 2.704±0.00 N/A 2.911±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RW CIL_0005RW_0002 CGP 17:28954901-29180412

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IMP Golgi membrane
GO:0003677 IEA DNA binding
GO:0003774 IEA motor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005802 IDA trans-Golgi network
GO:0005856 IEA cytoskeleton
GO:0006259 IEA DNA metabolic process
GO:0007030 IMP Golgi organization
GO:0008094 IEA DNA-dependent ATPase activity
GO:0016020 IDA membrane
GO:0016459 IEA myosin complex
GO:0016477 IMP cell migration
GO:0031032 IMP actomyosin structure organization
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway
GO:0042641 IDA actomyosin
GO:0043066 TAS negative regulation of apoptotic process
GO:0043531 IDA ADP binding
GO:0044822 IDA poly(A) RNA binding
GO:0048194 IMP Golgi vesicle budding
GO:0050714 IMP positive regulation of protein secretion
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061862 myo18ab myosin XVIIIAb protein_coding Danio_rerio
ENSDARG00000075752 myo18aa myosin XVIIIAa protein_coding Danio_rerio
ENSMUSG00000000631 Myo18a myosin XVIIIA protein_coding Mus_musculus

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