C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin XVIIIA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000527372 MYO18A-001 ENSG00000196535 9606 - 17:29073519-29180412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000527372
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000527372 7.709±0.00 2.759±0.00 6.876±4.18 2.181±0.00 2.063±0.00 2.233±0.00 1.971±0.00 2.220±0.00 1.430±0.00 2.351±0.00 9.409±3.53 4.810±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RW CIL_0005RW_0002 CGP 17:28954901-29180412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IMP Golgi membrane
GO:0003677 IEA DNA binding
GO:0003774 IEA motor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005802 IDA trans-Golgi network
GO:0005856 IEA cytoskeleton
GO:0006259 IEA DNA metabolic process
GO:0007030 IMP Golgi organization
GO:0008094 IEA DNA-dependent ATPase activity
GO:0016020 IDA membrane
GO:0016459 IEA myosin complex
GO:0016477 IMP cell migration
GO:0031032 IMP actomyosin structure organization
GO:0038032 IEA termination of G-protein coupled receptor signaling pathway
GO:0042641 IDA actomyosin
GO:0043066 TAS negative regulation of apoptotic process
GO:0043531 IDA ADP binding
GO:0044822 IDA poly(A) RNA binding
GO:0048194 IMP Golgi vesicle budding
GO:0050714 IMP positive regulation of protein secretion
GO:0051015 IDA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108375 Myo18a-002 protein_coding Mus_musculus 0 7899
ENSMUST00000102488 Myo18a-001 protein_coding Mus_musculus 0 7186
ENSMUST00000092887 Myo18a-202 protein_coding Mus_musculus 0 7169
ENSMUST00000000645 Myo18a-201 protein_coding Mus_musculus 0 7132
ENSMUST00000164334 Myo18a-023 protein_coding Mus_musculus 0 6370
ENSMUST00000130627 Myo18a-022 protein_coding Mus_musculus 0 6342
ENSMUST00000168348 Myo18a-016 protein_coding Mus_musculus 0 5958
ENSMUST00000092884 Myo18a-018 protein_coding Mus_musculus 0 5956
ENSMUST00000172303 Myo18a-015 protein_coding Mus_musculus 0 5956
ENSMUST00000130305 Myo18a-006 protein_coding Mus_musculus 0 5956
ENSMUST00000169105 Myo18a-005 protein_coding Mus_musculus 0 5956
ENSMUST00000100794 Myo18a-004 protein_coding Mus_musculus 0 5884
ENSMUST00000108376 Myo18a-003 protein_coding Mus_musculus 0 5751
ENSMUST00000167856 Myo18a-017 protein_coding Mus_musculus 0 5548
ENSMUST00000100795 Myo18a-014 retained_intron Mus_musculus 0 1330
ENSDART00000110835 myo18aa-201 protein_coding Danio_rerio 0 1181
ENSDART00000132023 myo18aa-001 protein_coding Danio_rerio 0 1181
ENSMUST00000135045 Myo18a-009 retained_intron Mus_musculus 0 527
ENSMUST00000134196 Myo18a-007 processed_transcript Mus_musculus 0 346
ENSMUST00000142571 Myo18a-010 retained_intron Mus_musculus 0 344
ENSMUST00000130956 Myo18a-008 retained_intron Mus_musculus 0 298
ENSMUST00000135375 Myo18a-011 protein_coding Mus_musculus 0 285
ENSMUST00000100443 Myo18a-019 retained_intron Mus_musculus 0 283
ENSMUST00000133740 Myo18a-012 processed_transcript Mus_musculus 0 233
ENSMUST00000164315 Myo18a-021 protein_coding Mus_musculus 0 202

Loading