C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin XVIIIA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530254 MYO18A-026 ENSG00000196535 9606 - 17:29073521-29140379 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000530254
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000530254 2.699±0.00 8.614±0.00 3.596±0.00 4.779±0.00 5.464±0.00 7.170±0.00 6.414±0.00 39.378±0.00 6.226±0.00 3.100±0.00 5.657±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RW CIL_0005RW_0002 CGP 17:28954901-29180412

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092887 Myo18a-202 protein_coding Mus_musculus 0 6490
ENSMUST00000102488 Myo18a-001 protein_coding Mus_musculus 0 6490
ENSMUST00000172303 Myo18a-015 protein_coding Mus_musculus 0 6486
ENSMUST00000000645 Myo18a-201 protein_coding Mus_musculus 0 6453
ENSMUST00000100794 Myo18a-004 protein_coding Mus_musculus 0 6414
ENSMUST00000169105 Myo18a-005 protein_coding Mus_musculus 0 6325
ENSMUST00000168348 Myo18a-016 protein_coding Mus_musculus 0 6324
ENSMUST00000130305 Myo18a-006 protein_coding Mus_musculus 0 6305
ENSMUST00000092884 Myo18a-018 protein_coding Mus_musculus 0 6270
ENSMUST00000167856 Myo18a-017 protein_coding Mus_musculus 0 6078
ENSMUST00000108375 Myo18a-002 protein_coding Mus_musculus 0 5960
ENSMUST00000164334 Myo18a-023 protein_coding Mus_musculus 0 5956
ENSMUST00000130627 Myo18a-022 protein_coding Mus_musculus 0 5956
ENSMUST00000108376 Myo18a-003 protein_coding Mus_musculus 0 4525
ENSMUST00000135045 Myo18a-009 retained_intron Mus_musculus 0 527
ENSMUST00000142571 Myo18a-010 retained_intron Mus_musculus 0 353
ENSMUST00000134196 Myo18a-007 processed_transcript Mus_musculus 0 346
ENSMUST00000130956 Myo18a-008 retained_intron Mus_musculus 0 298
ENSMUST00000100443 Myo18a-019 retained_intron Mus_musculus 0 283
ENSMUST00000133740 Myo18a-012 processed_transcript Mus_musculus 0 233

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