C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: plexin B2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196576 PLXNB2 9606 - 22:50274979-50307627 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359337 PLXNB2-201 50274979-50307572 protein_coding
  ENST00000411680 PLXNB2-007 50277853-50289561 protein_coding
  ENST00000425954 PLXNB2-003 50290100-50307603 protein_coding
  ENST00000427829 PLXNB2-010 50281574-50282880 protein_coding
  ENST00000432455 PLXNB2-012 50287987-50301462 protein_coding
  ENST00000434732 PLXNB2-008 50284167-50285843 protein_coding
  ENST00000449103 PLXNB2-001 50274979-50307627 protein_coding
  ENST00000463165 PLXNB2-005 50274985-50281934 retained_intron
  ENST00000479701 PLXNB2-004 50274979-50282562 retained_intron
  ENST00000479818 PLXNB2-006 50274979-50278840 retained_intron
  ENST00000492578 PLXNB2-011 50281127-50282006 retained_intron
  ENST00000496720 PLXNB2-009 50283338-50286253 processed_transcript
  ENST00000610984 PLXNB2-202 50274979-50283068 protein_coding
  ENST00000614805 PLXNB2-203 50277635-50280978 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359337ENST00000427829ENST00000449103ENST00000463165ENST00000479818ENST00000492578ENST00000610984
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359337 7.912±0.00 11.908±0.00 N/A N/A 6.620±4.31 3.482±0.00 2.339±0.00 17.136±0.00 9.994±0.00 20.340±0.00 N/A 23.580±11.47 19.158±7.30 7.905±0.00
ENST00000427829 N/A N/A N/A N/A N/A 17.845±0.00 N/A N/A N/A N/A 0.806±0.00 N/A N/A N/A
ENST00000449103 7.855±0.00 4.648±0.00 1.725±0.00 4.132±3.36 8.943±0.00 7.503±0.00 3.574±3.22 6.711±0.00 1.987±0.00 1.430±0.00 3.418±0.00 25.713±16.66 12.766±4.90 5.780±0.28
ENST00000463165 N/A 23.393±0.00 N/A 11.311±0.00 18.855±0.00 18.603±0.00 3.452±2.27 32.227±0.00 11.216±8.26 34.617±0.00 3.359±0.00 30.059±15.21 35.348±0.00 17.271±2.82
ENST00000479818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.575±0.00 49.296±0.00 N/A
ENST00000492578 N/A N/A 17.242±0.00 N/A N/A N/A 2.720±0.00 N/A 9.267±0.00 N/A N/A 11.561±0.00 N/A N/A
ENST00000610984 7.929±0.00 13.100±0.00 7.697±0.00 1.721±0.00 6.628±0.63 4.716±1.27 N/A 15.477±4.47 14.674±0.00 11.730±7.47 0.729±0.00 32.845±16.79 35.555±5.37 10.454±2.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009A CIL_00009A_0001 CGP 22:50263713-50307627

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 ISS neural tube closure
GO:0001932 ISS regulation of protein phosphorylation
GO:0004872 IEA receptor activity
GO:0005096 IEA GTPase activator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005887 ISS integral component of plasma membrane
GO:0007165 IEA signal transduction
GO:0007275 IEA multicellular organismal development
GO:0007405 ISS neuroblast proliferation
GO:0007420 ISS brain development
GO:0008360 ISS regulation of cell shape
GO:0009986 IDA cell surface
GO:0016020 IEA membrane
GO:0017154 ISS semaphorin receptor activity
GO:0032319 ISS regulation of Rho GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0050772 IEA positive regulation of axonogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0071526 ISS semaphorin-plexin signaling pathway
GO:2001222 ISS regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003811 plxnb2a plexin b2a protein_coding Danio_rerio
ENSDARG00000036985 plxnb2b plexin b2b protein_coding Danio_rerio
ENSDARG00000094799 plxnb2a plexin b2a protein_coding Danio_rerio
ENSMUSG00000036606 Plxnb2 plexin B2 protein_coding Mus_musculus

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