C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily V, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196689 TRPV1 9606 - 17:3565444-3597098 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310522 TRPV1-006 3566815-3592350 protein_coding
  ENST00000399756 TRPV1-003 3565794-3592877 protein_coding
  ENST00000399759 TRPV1-002 3565444-3595831 protein_coding
  ENST00000425167 TRPV1-005 3566778-3592367 protein_coding
  ENST00000570742 TRPV1-008 3573822-3577888 retained_intron
  ENST00000571088 TRPV1-001 3565444-3597098 protein_coding
  ENST00000574085 TRPV1-007 3566778-3592367 retained_intron
  ENST00000576351 TRPV1-004 3566813-3592383 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverMuscleOvaryTestisENST00000310522ENST00000399756ENST00000399759ENST00000571088ENST00000574085
Transcript ID Heart Liver Muscle Ovary Testis
ENST00000310522 N/A 0.404±0.00 N/A N/A 2.006±0.00
ENST00000399756 N/A N/A N/A 0.470±0.00 N/A
ENST00000399759 N/A N/A N/A 2.042±0.00 N/A
ENST00000571088 0.724±0.00 N/A N/A N/A N/A
ENST00000574085 N/A N/A 0.600±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004888 ISS transmembrane signaling receptor activity
GO:0005216 IEA ion channel activity
GO:0005231 ISS excitatory extracellular ligand-gated ion channel activity
GO:0005262 TAS calcium channel activity
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 ISS ATP binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007166 TAS cell surface receptor signaling pathway
GO:0007635 TAS chemosensory behavior
GO:0015278 ISS calcium-release channel activity
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0031226 ISS intrinsic component of plasma membrane
GO:0034220 IEA ion transmembrane transport
GO:0042995 IEA cell projection
GO:0045211 ISS postsynaptic membrane
GO:0050955 IDA thermoception
GO:0051219 IPI phosphoprotein binding
GO:0055085 TAS transmembrane transport
GO:0070588 ISS calcium ion transmembrane transport
GO:0071312 ISS cellular response to alkaloid
GO:0071318 ISS cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059883 trpv1 transient receptor potential cation channel, subfamily V, member 1 protein_coding Danio_rerio
ENSMUSG00000005952 Trpv1 transient receptor potential cation channel, subfamily V, member 1 protein_coding Mus_musculus

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