C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000571088 TRPV1-001 ENSG00000196689 9606 - 17:3565444-3597098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartENST00000571088
Transcript ID Heart
ENST00000571088 0.724±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 ISS transmembrane signaling receptor activity
GO:0005216 IEA ion channel activity
GO:0005231 ISS excitatory extracellular ligand-gated ion channel activity
GO:0005262 TAS calcium channel activity
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 ISS ATP binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007166 TAS cell surface receptor signaling pathway
GO:0007635 TAS chemosensory behavior
GO:0015278 ISS calcium-release channel activity
GO:0016021 IDA:IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0031226 ISS intrinsic component of plasma membrane
GO:0034220 TAS ion transmembrane transport
GO:0042995 IEA cell projection
GO:0045211 ISS postsynaptic membrane
GO:0050955 IDA thermoception
GO:0051219 IPI phosphoprotein binding
GO:0055085 TAS transmembrane transport
GO:0070588 ISS calcium ion transmembrane transport
GO:0071312 ISS cellular response to alkaloid
GO:0071318 ISS cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102526 Trpv1-001 protein_coding Mus_musculus 0 2728
ENSMUST00000138853 Trpv1-004 protein_coding Mus_musculus 0 1958
ENSMUST00000108470 Trpv1-003 protein_coding Mus_musculus 0 1506
ENSMUST00000006106 Trpv1-002 protein_coding Mus_musculus 0 1502
ENSMUST00000128113 Trpv1-005 processed_transcript Mus_musculus 0 510
ENSMUST00000112217 Trpv4-007 protein_coding Mus_musculus 0 206
ENSMUST00000112219 Trpv4-006 protein_coding Mus_musculus 0 206
ENSMUST00000112222 Trpv4-005 protein_coding Mus_musculus 0 206
ENSMUST00000133019 Trpv4-004 retained_intron Mus_musculus 0 206
ENSMUST00000112225 Trpv4-002 protein_coding Mus_musculus 0 206
ENSMUST00000071968 Trpv4-001 protein_coding Mus_musculus 0 206

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