C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, beta 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196878 LAMB3 9606 - 1:209614870-209652466 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356082 LAMB3-001 209614870-209652466 protein_coding
  ENST00000367030 LAMB3-002 209614977-209652329 protein_coding
  ENST00000391911 LAMB3-201 209614875-209651334 protein_coding
  ENST00000415782 LAMB3-003 209634447-209651394 protein_coding
  ENST00000455193 LAMB3-004 209616581-209618798 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356082ENST00000367030ENST00000391911ENST00000415782ENST00000455193
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356082 0.661±0.00 0.042±0.00 N/A 0.176±0.01 9.840±6.58 1.215±0.48 0.119±0.00 4.324±0.00 0.993±0.00 8.306±5.57 0.205±0.00 15.630±12.35 14.317±9.90 0.751±0.00
ENST00000367030 N/A 0.227±0.00 0.540±0.00 N/A N/A 0.275±0.00 0.271±0.00 0.096±0.00 0.595±0.00 8.178±0.00 0.020±0.00 N/A N/A 0.075±0.00
ENST00000391911 N/A N/A N/A N/A N/A 1.271±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A
ENST00000455193 N/A N/A 0.347±0.00 N/A N/A N/A 0.123±0.00 0.462±0.00 N/A N/A 0.463±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089N CIL_00089N_0001 VISTA 1:209189712-209790617
CIL_0007ZL CIL_0007ZL_0001 VISTA 1:209515705-210116479

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 NAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005604 IEA basement membrane
GO:0005610 IEA laminin-5 complex
GO:0007155 IEA cell adhesion
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0032403 IEA protein complex binding
GO:0034329 TAS cell junction assembly
GO:0035987 IEP endodermal cell differentiation
GO:0050873 IEA brown fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090530 LAMB3 laminin, beta 3 protein_coding Danio_rerio
ENSMUSG00000026639 Lamb3 laminin, beta 3 protein_coding Mus_musculus

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