C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: laminin, beta 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026639 Lamb3 10090 + 1:193301957-193343878 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016315 Lamb3-001 193301957-193343878 protein_coding
  ENSMUST00000159955 Lamb3-002 193302243-193343875 protein_coding
  ENSMUST00000161526 Lamb3-004 193320695-193325990 processed_transcript
  ENSMUST00000162180 Lamb3-003 193302222-193303405 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016315ENSMUST00000159955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016315 1.574±1.07 0.159±0.00 8.162±0.51 0.053±0.02 2.513±0.74 19.774±4.01 N/A 0.428±0.14 0.207±0.17 9.736±2.16 N/A 0.665±0.11 0.674±0.52 N/A
ENSMUST00000159955 1.042±0.23 0.106±0.01 3.888±0.00 0.134±0.00 1.093±0.20 13.307±0.00 1.229±0.37 0.211±0.00 0.595±0.30 N/A 0.138±0.02 1.313±0.65 0.264±0.05 1.420±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZL CIL_0007ZL_0002 VISTA 1:192841048-193441723
CIL_00089N CIL_00089N_0002 VISTA 1:193149329-193750185

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005610 IDA laminin-5 complex
GO:0007155 IEA cell adhesion
GO:0050873 IDA brown fat cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090530 LAMB3 laminin, beta 3 protein_coding Danio_rerio
ENSG00000196878 LAMB3 laminin, beta 3 protein_coding Homo_sapiens

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