C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356082 LAMB3-001 ENSG00000196878 9606 - 1:209614870-209652466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356082
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356082 0.661±0.00 0.042±0.00 0.176±0.01 9.840±6.58 1.215±0.48 0.119±0.00 4.324±0.00 0.993±0.00 8.306±5.57 0.205±0.00 15.630±12.35 14.317±9.90 0.751±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089N CIL_00089N_0001 VISTA 1:209189712-209790617
CIL_0007ZL CIL_0007ZL_0001 VISTA 1:209515705-210116479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 NAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0007155 IEA cell adhesion
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0035987 IEP endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016315 Lamb3-001 protein_coding Mus_musculus 0 3073
ENSMUST00000159955 Lamb3-002 protein_coding Mus_musculus 0 3064
ENSMUST00000161526 Lamb3-004 processed_transcript Mus_musculus 0 363

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