C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367030 LAMB3-002 ENSG00000196878 9606 - 1:209614977-209652329 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonHeartKidneyLiverLungMuscleTestisENST00000367030
Transcript ID Adrenal Bladder Colon Heart Kidney Liver Lung Muscle Testis
ENST00000367030 0.227±0.00 0.540±0.00 0.275±0.00 0.271±0.00 0.096±0.00 0.595±0.00 8.178±0.00 0.020±0.00 0.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089N CIL_00089N_0001 VISTA 1:209189712-209790617
CIL_0007ZL CIL_0007ZL_0001 VISTA 1:209515705-210116479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 NAS structural molecule activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0007155 IEA cell adhesion
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0035987 IEP endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000159955 Lamb3-002 protein_coding Mus_musculus 0 3064
ENSMUST00000016315 Lamb3-001 protein_coding Mus_musculus 0 3064
ENSMUST00000161526 Lamb3-004 processed_transcript Mus_musculus 0 363

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