C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: post-GPI attachment to proteins 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197121 PGAP1 9606 - 2:196833004-196927796 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354764 PGAP1-001 196833004-196926731 protein_coding
  ENST00000374738 PGAP1-011 196885846-196926745 protein_coding
  ENST00000409188 PGAP1-006 196885453-196927795 protein_coding
  ENST00000409475 PGAP1-005 196847476-196926730 protein_coding
  ENST00000422444 PGAP1-003 196835590-196845983 protein_coding
  ENST00000423035 PGAP1-002 196835184-196926655 nonsense_mediated_decay
  ENST00000459896 PGAP1-008 196837871-196842825 processed_transcript
  ENST00000470179 PGAP1-004 196841339-196926740 retained_intron
  ENST00000476250 PGAP1-009 196872626-196873956 retained_intron
  ENST00000482051 PGAP1-010 196872960-196890857 processed_transcript
  ENST00000485830 PGAP1-007 196890867-196927796 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354764ENST00000409475ENST00000422444ENST00000423035ENST00000470179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354764 N/A N/A N/A 1.362±0.76 0.250±0.00 0.248±0.00 0.116±0.00 N/A 0.210±0.19 0.698±0.00 N/A 0.494±0.01 0.186±0.00 N/A
ENST00000409475 N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A 1.959±0.00 1.313±0.00 N/A 4.865±0.00 N/A N/A
ENST00000422444 0.145±0.00 0.169±0.00 0.846±0.00 0.975±0.04 0.514±0.04 0.766±0.00 0.341±0.03 0.495±0.14 0.096±0.00 1.082±0.51 0.273±0.05 1.317±0.99 0.351±0.13 0.513±0.00
ENST00000423035 0.371±0.00 N/A N/A 0.582±0.01 N/A N/A 0.171±0.01 N/A 1.350±0.00 0.402±0.00 N/A 0.965±0.35 0.223±0.03 0.540±0.07
ENST00000470179 N/A N/A N/A N/A 0.719±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KE CIL_0002KE_0001 CGP 2:196833004-197311173

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004518 ISS nuclease activity
GO:0005783 ISS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006501 TAS C-terminal protein lipidation
GO:0006505 IEA GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0006886 IEA intracellular protein transport
GO:0007605 IEA sensory perception of sound
GO:0009880 IEA embryonic pattern specification
GO:0009948 IEA anterior/posterior axis specification
GO:0015798 ISS myo-inositol transport
GO:0016021 IEA integral component of membrane
GO:0016255 TAS attachment of GPI anchor to protein
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0021871 IEA forebrain regionalization
GO:0042578 ISS phosphoric ester hydrolase activity
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0060322 IEA head development
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062465 pgap1 post-GPI attachment to proteins 1 protein_coding Danio_rerio
ENSMUSG00000073678 Pgap1 post-GPI attachment to proteins 1 protein_coding Mus_musculus

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