C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: post-GPI attachment to proteins 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354764 PGAP1-001 ENSG00000197121 9606 - 2:196833004-196926731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungOvaryPlacentaENST00000354764
Transcript ID Brain Breast Colon Heart Liver Lung Ovary Placenta
ENST00000354764 1.362±0.76 0.250±0.00 0.248±0.00 0.116±0.00 0.210±0.19 0.698±0.00 0.494±0.01 0.186±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KE CIL_0002KE_0001 CGP 2:196833004-197311173

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004518 ISS nuclease activity
GO:0005783 ISS endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006501 TAS C-terminal protein lipidation
GO:0006505 IEA GPI anchor metabolic process
GO:0006506 IEA GPI anchor biosynthetic process
GO:0006886 IEA intracellular protein transport
GO:0007605 IEA sensory perception of sound
GO:0009880 IEA embryonic pattern specification
GO:0009948 IEA anterior/posterior axis specification
GO:0015798 ISS myo-inositol transport
GO:0016021 IEA integral component of membrane
GO:0016255 TAS attachment of GPI anchor to protein
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0021871 IEA forebrain regionalization
GO:0042578 ISS phosphoric ester hydrolase activity
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0060322 IEA head development
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097739 Pgap1-001 protein_coding Mus_musculus 0 3491
ENSMUST00000185817 Pgap1-004 retained_intron Mus_musculus 0 1749
ENSMUST00000189506 Pgap1-002 retained_intron Mus_musculus 0 209

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