C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000197576 HOXA4 9606 - 7:27128507-27130799 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360046 HOXA4-001 27128507-27130799 protein_coding
  ENST00000428284 HOXA4-201 27128533-27130733 protein_coding
  ENST00000511914 HOXA4-004 27128664-27130191 protein_coding
  ENST00000610970 HOXA4-202 27128507-27130780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000360046ENST00000428284ENST00000511914ENST00000610970
Transcript ID Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000360046 N/A N/A N/A 0.158±0.00 N/A N/A N/A N/A
ENST00000428284 N/A 0.476±0.00 0.797±0.00 1.534±0.00 N/A N/A N/A 0.131±0.00
ENST00000511914 7.116±0.00 0.129±0.00 N/A 0.178±0.00 7.612±0.00 5.760±0.00 N/A 0.548±0.00
ENST00000610970 N/A N/A N/A N/A N/A N/A 2.796±0.45 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PB CIL_0003PB_0001 CGP 7:27128507-27143668

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0009653 TAS anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000000942 Hoxa4 homeobox A4 protein_coding Mus_musculus

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