C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197576-ENSG00000106004 CGP 9606 7:27128507-27143668
GeneTranscriptPositionBiotype
ENSG00000106004 (HOXA5)
homeobox A5 		ENST00000222726 (HOXA5-001) 27141052-27143668 protein_coding
ENST00000520854 (HOXA5-002) 27141807-27142775 processed_transcript
ENSG00000197576 (HOXA4)
homeobox A4 		ENST00000360046 (HOXA4-001) 27128507-27130799 protein_coding
ENST00000428284 (HOXA4-201) 27128533-27130733 protein_coding
ENST00000511914 (HOXA4-004) 27128664-27130191 protein_coding
ENST00000610970 (HOXA4-202) 27128507-27130780 protein_coding
ENSG00000273433 (RP1-170O19.22)
 ENST00000467897 (RP1-170O19.22-001) 27128969-27152561 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0003PB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000942-ENSMUSG00000038253 CGP 10090 6:52189671-52204587
GeneTranscriptPositionBiotype
ENSMUSG00000000942 (Hoxa4)
homeobox A4 		ENSMUST00000101395 (Hoxa4-001) 52189671-52191753 protein_coding
ENSMUSG00000038253 (Hoxa5)
homeobox A5 		ENSMUST00000048794 (Hoxa5-001) 52201754-52204587 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PB_0001ENSG00000106004ENST00000222726ENST00000520854ENSG00000197576ENST00000360046ENST00000428284ENST00000511914ENST00000610970ENSG00000273433ENST00000467897CIL_0003PB_0002ENSMUSG00000000942ENSMUST00000101395ENSMUSG00000038253ENSMUST00000048794
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PB_0001ENSG00000106004ENST00000222726ENST00000520854ENSG00000197576ENST00000360046ENST00000428284ENST00000511914ENST00000610970ENSG00000273433ENST00000467897CIL_0003PB_0002ENSMUSG00000000942ENSMUST00000101395ENSMUSG00000038253ENSMUST00000048794
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106004 ENST00000222726 1.234±0.00 5.326±0.00 2.457±0.00 N/A 4.078±2.23 4.910±1.21 0.044±0.00 5.781±5.74 1.093±0.97 7.167±2.77 1.834±0.31 1.766±1.43 0.189±0.08 1.783±1.43
ENST00000520854 N/A N/A N/A N/A N/A N/A N/A N/A 0.320±0.00 11.205±0.00 2.308±0.00 1.561±0.65 0.702±0.62 0.776±0.00
ENSG00000197576 ENST00000360046 N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A N/A N/A N/A N/A
ENST00000428284 N/A N/A N/A N/A N/A N/A 0.476±0.00 0.797±0.00 1.534±0.00 N/A N/A N/A 0.131±0.00 N/A
ENST00000511914 N/A N/A N/A N/A N/A 7.116±0.00 0.129±0.00 N/A 0.178±0.00 7.612±0.00 5.760±0.00 N/A 0.548±0.00 N/A
ENST00000610970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.796±0.45 N/A N/A
ENSG00000273433 ENST00000467897 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.231±0.00 1.512±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000942 ENSMUST00000101395 N/A N/A N/A 4.624±3.86 1.949±0.00 N/A 0.456±0.04 N/A 0.284±0.16 3.255±0.60 2.774±0.37 N/A 0.504±0.12 19.848±8.50
ENSMUSG00000038253 ENSMUST00000048794 2.141±1.00 6.396±3.91 2.667±1.02 8.376±6.15 2.514±1.15 7.121±0.96 0.464±0.18 3.878±0.82 0.466±0.42 20.336±5.61 0.922±0.17 7.019±3.48 0.247±0.13 0.084±0.05

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