C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small VCP/p97-interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198168 SVIP 9606 - 11:22813799-22830299 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354193 SVIP-001 22818929-22829865 protein_coding
  ENST00000525670 SVIP-005 22813799-22827877 processed_transcript
  ENST00000529848 SVIP-002 22827245-22830299 processed_transcript
  ENST00000530199 SVIP-004 22822867-22829373 processed_transcript
  ENST00000533774 SVIP-003 22822747-22829571 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354193ENST00000525670ENST00000529848ENST00000530199ENST00000533774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354193 0.198±0.00 1.886±0.00 1.042±0.00 3.497±1.02 0.476±0.01 1.776±0.00 0.649±0.07 1.389±0.19 0.477±0.05 1.281±0.57 0.566±0.25 1.246±0.36 0.288±0.15 2.050±0.49
ENST00000525670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.911±0.00 N/A N/A N/A
ENST00000529848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.021±0.00
ENST00000530199 1.551±0.00 N/A N/A N/A 1.658±0.00 3.296±0.00 4.818±0.00 N/A 3.604±0.00 11.524±0.00 1.920±0.00 N/A 0.864±0.25 12.418±7.52
ENST00000533774 1.974±0.00 6.340±0.00 N/A N/A 0.917±0.00 N/A N/A N/A N/A N/A 1.466±0.00 N/A 0.650±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088G CIL_00088G_0001 VISTA 11:22474995-23077197
CIL_0000L8 CIL_0000L8_0001 CGP 11:22625642-22830299
CIL_0003FW CIL_0003FW_0001 CGP 11:22813799-22860426

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000836 IDA Hrd1p ubiquitin ligase complex
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0010508 IMP positive regulation of autophagy
GO:0031333 IMP negative regulation of protein complex assembly
GO:0043621 IMP protein self-association
GO:0070062 IDA extracellular vesicular exosome
GO:1903061 IMP positive regulation of protein lipidation
GO:1903070 IMP negative regulation of ER-associated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000097236 SVIP small VCP/p97-interacting protein protein_coding Danio_rerio
ENSMUSG00000074093 Svip small VCP/p97-interacting protein protein_coding Mus_musculus

Loading