C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seizure threshold 2 homolog (mouse)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000562955 SZT2-004 ENSG00000198198 9606 + 1:43389969-43452633 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000562955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000562955 2.415±0.00 3.602±0.00 1.135±0.00 1.626±1.19 1.913±0.99 1.255±0.20 0.961±0.69 1.610±0.00 0.956±0.00 1.217±0.14 1.449±1.01 1.375±0.02 1.496±0.61 4.605±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B4 CIL_0005B4_0002 CGP 1:43383917-43452650
CIL_0005B5 CIL_0005B5_0002 CGP 1:43389882-43453989

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005777 ISS peroxisome
GO:0007417 ISS central nervous system development
GO:0009791 ISS post-embryonic development
GO:0021540 IMP corpus callosum morphogenesis
GO:0043473 IEA pigmentation
GO:0070062 IDA extracellular vesicular exosome
GO:1901668 ISS regulation of superoxide dismutase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075406 Szt2-001 protein_coding Mus_musculus 0 8163
ENSMUST00000183402 Szt2-002 nonsense_mediated_decay Mus_musculus 0 1991
ENSMUST00000138386 Szt2-005 retained_intron Mus_musculus 0 575
ENSMUST00000130058 Szt2-003 processed_transcript Mus_musculus 0 344
ENSMUST00000138632 Szt2-004 retained_intron Mus_musculus 0 246
ENSMUST00000132882 Hyi-003 retained_intron Mus_musculus 1e-31 145
ENSMUST00000006562 Hyi-201 protein_coding Mus_musculus 1e-27 132
ENSMUST00000106393 Hyi-001 nonsense_mediated_decay Mus_musculus 1e-26 128

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