C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: seizure threshold 2 homolog (mouse)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460536 SZT2-009 ENSG00000198198 9606 + 1:43445252-43452650 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000460536
Transcript ID Bladder
ENST00000460536 2.157±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005B4 CIL_0005B4_0002 CGP 1:43383917-43452650
CIL_0005B5 CIL_0005B5_0002 CGP 1:43389882-43453989

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075406 Szt2-001 protein_coding Mus_musculus 0 1886
ENSMUST00000183402 Szt2-002 nonsense_mediated_decay Mus_musculus 0 1543
ENSMUST00000130058 Szt2-003 processed_transcript Mus_musculus 0 344
ENSMUST00000138632 Szt2-004 retained_intron Mus_musculus 0 246
ENSMUST00000132882 Hyi-003 retained_intron Mus_musculus 4e-32 145
ENSMUST00000006562 Hyi-201 protein_coding Mus_musculus 4e-28 132
ENSMUST00000106393 Hyi-001 nonsense_mediated_decay Mus_musculus 5e-27 128

Loading