C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514170 CNGA1-006 ENSG00000198515 9606 - 4:47935977-48016592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverOvaryTestisENST00000514170
Transcript ID Breast Kidney Liver Ovary Testis
ENST00000514170 0.134±0.00 0.730±0.09 0.440±0.32 0.383±0.10 0.069±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0001 VISTA 4:47524449-48126035

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006811 IEA ion transport
GO:0007601 IEA visual perception
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0030553 IBA cGMP binding
GO:0042391 IBA regulation of membrane potential
GO:0055085 IEA transmembrane transport
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087213 Cnga1-001 protein_coding Mus_musculus 0 2344
ENSMUST00000169997 Cnga1-201 protein_coding Mus_musculus 0 2296

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