C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosomal binding domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198830 HMGN2 9606 + 1:26472450-26475972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361427 HMGN2-001 26472519-26475972 protein_coding
  ENST00000460563 HMGN2-004 26472477-26475432 processed_transcript
  ENST00000463817 HMGN2-006 26472511-26475568 processed_transcript
  ENST00000464888 HMGN2-005 26472506-26475158 processed_transcript
  ENST00000466194 HMGN2-009 26473206-26475565 processed_transcript
  ENST00000467700 HMGN2-007 26472517-26475626 processed_transcript
  ENST00000468388 HMGN2-002 26472450-26474128 processed_transcript
  ENST00000479815 HMGN2-003 26472463-26475228 processed_transcript
  ENST00000493418 HMGN2-008 26473429-26475360 processed_transcript
  ENST00000619352 HMGN2-201 26472515-26475970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361427ENST00000466194ENST00000619352
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361427 74.903±0.00 38.797±0.00 15.296±0.00 37.884±7.15 53.517±21.77 69.307±17.96 17.951±3.81 55.374±19.26 30.789±14.56 59.441±4.88 35.283±21.26 121.682±95.05 157.984±47.03 61.060±30.42
ENST00000466194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.217±0.00
ENST00000619352 N/A N/A N/A N/A 7.701±0.00 9.496±0.00 6.023±0.00 N/A 5.221±0.00 20.304±0.00 14.085±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0031492 IEA nucleosomal DNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000003038 Hmgn2 high mobility group nucleosomal binding domain 2 protein_coding Mus_musculus
ENSMUSG00000070713 Gm10282 predicted pseudogene 10282 protein_coding Mus_musculus
ENSMUSG00000073371 Gm6594 predicted pseudogene 6594 protein_coding Mus_musculus
ENSMUSG00000091775 Gm16494 predicted gene 16494 protein_coding Mus_musculus
ENSMUSG00000100622 RP24-447G12.2 protein_coding Mus_musculus

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