C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosomal binding domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003038 Hmgn2 10090 - 4:133964738-133968650 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000100472 Hmgn2-007 133965020-133967893 protein_coding
  ENSMUST00000102552 Hmgn2-003 133965413-133968650 protein_coding
  ENSMUST00000102553 Hmgn2-001 133964738-133968001 protein_coding
  ENSMUST00000105893 Hmgn2-009 133964990-133967441 protein_coding
  ENSMUST00000123234 Hmgn2-012 133965444-133967243 protein_coding
  ENSMUST00000125266 Hmgn2-011 133965442-133967251 processed_transcript
  ENSMUST00000130809 Hmgn2-005 133965486-133967909 retained_intron
  ENSMUST00000136327 Hmgn2-006 133965501-133967894 protein_coding
  ENSMUST00000136859 Hmgn2-008 133965599-133967861 retained_intron
  ENSMUST00000137456 Hmgn2-010 133965440-133967275 processed_transcript
  ENSMUST00000138458 Hmgn2-004 133965430-133968650 processed_transcript
  ENSMUST00000145025 Hmgn2-002 133964991-133967908 retained_intron
  ENSMUST00000153622 Hmgn2-013 133965589-133967891 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100472ENSMUST00000102552ENSMUST00000102553ENSMUST00000105893ENSMUST00000123234ENSMUST00000130809ENSMUST00000136327ENSMUST00000137456ENSMUST00000145025ENSMUST00000153622
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100472 N/A N/A N/A N/A N/A N/A 3.347±0.00 N/A 0.796±0.00 N/A N/A N/A N/A N/A
ENSMUST00000102552 N/A N/A N/A N/A N/A N/A N/A N/A 80.062±0.00 N/A N/A N/A 84.829±15.75 N/A
ENSMUST00000102553 19.593±3.17 8.105±1.65 50.354±2.34 135.610±99.58 5.865±1.85 7.370±2.09 11.140±0.73 8.320±1.79 88.176±94.33 11.991±1.55 13.471±3.03 18.872±16.49 87.628±76.53 7.221±0.57
ENSMUST00000105893 N/A N/A N/A N/A 1.895±0.00 N/A N/A N/A N/A N/A 6.231±1.83 54.725±31.95 27.680±7.73 3.021±0.07
ENSMUST00000123234 N/A N/A N/A 13.324±0.00 N/A N/A N/A N/A N/A N/A N/A 138.533±0.00 129.729±38.75 36.390±0.00
ENSMUST00000130809 N/A N/A N/A 3.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136327 N/A N/A N/A N/A N/A N/A N/A 4.268±0.00 N/A 3.581±0.00 N/A 10.329±3.10 N/A 4.194±0.00
ENSMUST00000137456 N/A 8.864±0.51 N/A 19.752±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 27.959±0.00 7.873±2.99
ENSMUST00000145025 2.740±0.23 1.806±1.08 N/A N/A 1.003±0.33 0.889±0.14 1.093±0.00 0.481±0.01 0.149±0.00 1.459±0.35 N/A 2.592±1.10 N/A 1.569±0.20
ENSMUST00000153622 N/A N/A N/A N/A 1.583±0.00 N/A N/A 1.842±0.00 N/A N/A N/A 5.716±0.00 65.752±24.35 4.489±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0031492 IEA nucleosomal DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000182952 HMGN4 high mobility group nucleosomal binding domain 4 protein_coding Homo_sapiens
ENSG00000198830 HMGN2 high mobility group nucleosomal binding domain 2 protein_coding Homo_sapiens

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