C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361427 HMGN2-001 ENSG00000198830 9606 + 1:26472519-26475972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361427
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361427 74.903±0.00 38.797±0.00 15.296±0.00 37.884±7.15 53.517±21.77 69.307±17.96 17.951±3.81 55.374±19.26 30.789±14.56 59.441±4.88 35.283±21.26 121.682±95.05 157.984±47.03 61.060±30.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0001 VISTA 1:26423129-27024414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0031492 IEA nucleosomal DNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102553 Hmgn2-001 protein_coding Mus_musculus 0 1061
ENSMUST00000075602 Gm10282-201 protein_coding Mus_musculus 0 1055
ENSMUST00000178676 Gm10182-201 processed_pseudogene Mus_musculus 0 1031
ENSMUST00000188317 RP24-447G12.2-001 protein_coding Mus_musculus 0 905
ENSMUST00000100472 Hmgn2-007 protein_coding Mus_musculus 0 749
ENSMUST00000105893 Hmgn2-009 protein_coding Mus_musculus 0 717
ENSMUST00000102552 Hmgn2-003 protein_coding Mus_musculus 0 640
ENSMUST00000145025 Hmgn2-002 retained_intron Mus_musculus 0 608
ENSMUST00000138458 Hmgn2-004 processed_transcript Mus_musculus 0 575
ENSMUST00000137456 Hmgn2-010 processed_transcript Mus_musculus 0 556
ENSMUST00000125266 Hmgn2-011 processed_transcript Mus_musculus 0 549
ENSMUST00000123234 Hmgn2-012 protein_coding Mus_musculus 0 545
ENSMUST00000121537 Gm7931-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000093430 Gm7125-201 processed_pseudogene Mus_musculus 0 394
ENSMUST00000189273 RP23-429J21.2-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000153622 Hmgn2-013 retained_intron Mus_musculus 0 385
ENSMUST00000136327 Hmgn2-006 protein_coding Mus_musculus 0 385
ENSMUST00000120716 Hmgn2-ps1-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000159886 Gm10357-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000130809 Hmgn2-005 retained_intron Mus_musculus 0 368
ENSMUST00000189471 RP24-176P22.2-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000115986 Hmgn2l6-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000120483 Gm14008-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000121255 Gm6985-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000097278 Gm6594-201 protein_coding Mus_musculus 0 318
ENSMUST00000184601 Gm10105-001 processed_pseudogene Mus_musculus 0 316
ENSMUST00000165525 Gm16494-201 protein_coding Mus_musculus 0 313
ENSMUST00000118775 Gm15195-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000120954 Gm12196-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000071770 Gm5899-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000177675 Gm20379-201 processed_pseudogene Mus_musculus 0 272
ENSMUST00000074801 Gm10298-201 processed_pseudogene Mus_musculus 0 267
ENSMUST00000120815 Gm14069-001 unprocessed_pseudogene Mus_musculus 0 255
ENSMUST00000153501 Gm16510-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000136859 Hmgn2-008 retained_intron Mus_musculus 0 213

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