C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: listerin E3 ubiquitin protein ligase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198862 LTN1 9606 - 21:28928144-28992956 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361371 LTN1-008 28928144-28992885 protein_coding
  ENST00000389194 LTN1-001 28928144-28992949 protein_coding
  ENST00000389195 LTN1-002 28961317-28992949 protein_coding
  ENST00000475344 LTN1-005 28958450-28960821 retained_intron
  ENST00000483326 LTN1-004 28966895-28986761 nonsense_mediated_decay
  ENST00000486427 LTN1-006 28958406-28959862 retained_intron
  ENST00000614971 LTN1-201 28928144-28992956 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361371ENST00000389194ENST00000389195ENST00000483326ENST00000614971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361371 2.305±0.00 0.413±0.00 1.577±0.00 3.063±1.14 2.374±0.83 1.226±0.01 2.050±0.02 2.007±0.84 2.847±2.42 2.024±1.05 1.860±1.15 2.103±2.51 0.765±0.23 N/A
ENST00000389194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.202±0.00
ENST00000389195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.776±0.00 N/A N/A 1.471±0.00
ENST00000483326 N/A N/A 2.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.567±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XV CIL_0002XV_0001 CGP 21:28872191-28992956
CIL_0006DO CIL_0006DO_0001 CGP 21:28928144-29019378

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding
GO:0051865 IEA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003984 LTN1 listerin E3 ubiquitin protein ligase 1 protein_coding Danio_rerio
ENSMUSG00000052299 Ltn1 listerin E3 ubiquitin protein ligase 1 protein_coding Mus_musculus

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