C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choroideremia-like (Rab escort protein 2)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000203668 CHML 9606 - 1:241628853-241635930 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366553 CHML-001 241628853-241635930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366553 1.187±0.00 0.638±0.00 0.995±0.00 1.550±0.35 1.531±0.87 1.769±0.52 0.944±0.15 1.108±0.11 0.870±0.64 2.069±1.54 0.538±0.07 1.735±0.27 2.052±1.17 2.666±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000I7 CIL_0000I7_0001 CGP 1:241532134-241677376
CIL_0003AP CIL_0003AP_0001 CGP 1:241590102-241677376
CIL_0003AJ CIL_0003AJ_0001 CGP 1:241628853-241802133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005096 IEA GTPase activator activity
GO:0005968 IMP Rab-protein geranylgeranyltransferase complex
GO:0006886 IEA intracellular protein transport
GO:0017137 IDA Rab GTPase binding
GO:0018344 IMP protein geranylgeranylation
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003845 chm choroideremia (Rab escort protein 1) protein_coding Danio_rerio
ENSMUSG00000078185 Chml choroideremia-like protein_coding Mus_musculus

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