C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choroideremia-like (Rab escort protein 2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000366553 CHML-001 ENSG00000203668 9606 - 1:241628853-241635930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366553
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366553 1.187±0.00 0.638±0.00 0.995±0.00 1.550±0.35 1.531±0.87 1.769±0.52 0.944±0.15 1.108±0.11 0.870±0.64 2.069±1.54 0.538±0.07 1.735±0.27 2.052±1.17 2.666±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000I7 CIL_0000I7_0001 CGP 1:241532134-241677376
CIL_0003AP CIL_0003AP_0001 CGP 1:241590102-241677376
CIL_0003AJ CIL_0003AJ_0001 CGP 1:241628853-241802133

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004663 IEA Rab geranylgeranyltransferase activity
GO:0005096 IEA GTPase activator activity
GO:0005968 IMP Rab-protein geranylgeranyltransferase complex
GO:0006886 IEA intracellular protein transport
GO:0017137 IDA Rab GTPase binding
GO:0018344 IMP protein geranylgeranylation
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000104984 Chml-001 protein_coding Mus_musculus 0 1646
ENSMUST00000135821 Chm-003 processed_transcript Mus_musculus 0 259
ENSMUST00000113388 Chm-002 protein_coding Mus_musculus 0 259
ENSMUST00000026607 Chm-001 protein_coding Mus_musculus 0 259
ENSMUST00000133469 Chm-004 processed_transcript Mus_musculus 0 217

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