C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003AJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000203668-ENSG00000162843 CGP 9606 1:241628853-241802133
GeneTranscriptPositionBiotype
ENSG00000054277 (OPN3)
opsin 3 		ENST00000366554 (OPN3-001) 241593124-241640361 protein_coding
ENST00000462265 (OPN3-006) 241590102-241601178 processed_transcript
ENST00000463155 (OPN3-005) 241594212-241677376 processed_transcript
ENST00000469376 (OPN3-002) 241593602-241640340 processed_transcript
ENST00000478849 (OPN3-004) 241594598-241640210 processed_transcript
ENST00000490673 (OPN3-003) 241593602-241640355 processed_transcript
ENSG00000162843 (WDR64)
WD repeat domain 64 		ENST00000366552 (WDR64-201) 241652278-241802133 protein_coding
ENST00000414635 (WDR64-003) 241683580-241801463 protein_coding
ENST00000425826 (WDR64-002) 241749547-241801655 protein_coding
ENST00000437684 (WDR64-202) 241683580-241801467 protein_coding
ENST00000461971 (WDR64-008) 241660528-241683657 processed_transcript
ENST00000472717 (WDR64-004) 241741548-241796298 nonsense_mediated_decay
ENST00000478331 (WDR64-007) 241770455-241787894 retained_intron
ENST00000496914 (WDR64-006) 241660633-241676408 processed_transcript
ENSG00000203668 (CHML)
choroideremia-like (Rab escort protein 2) 		ENST00000366553 (CHML-001) 241628853-241635930 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0003AJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000078185-ENSMUSG00000026523 CGP 10090 1:175686488-175815734
GeneTranscriptPositionBiotype
ENSMUSG00000026523 (Wdr64)
WD repeat domain 64 		ENSMUST00000094288 (Wdr64-201) 175698593-175815734 protein_coding
ENSMUST00000171939 (Wdr64-202) 175698593-175815734 protein_coding
ENSMUSG00000026525 (Opn3)
opsin 3 		ENSMUST00000027809 (Opn3-001) 175662421-175692776 protein_coding
ENSMUSG00000078185 (Chml)
choroideremia-like 		ENSMUST00000104984 (Chml-001) 175686488-175688353 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AJ_0001ENSG00000054277ENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673ENSG00000162843ENST00000366552ENST00000414635ENST00000425826ENST00000437684ENST00000461971ENST00000472717ENST00000478331ENST00000496914ENSG00000203668ENST00000366553CIL_0003AJ_0002ENSMUSG00000026523ENSMUST00000094288ENSMUST00000171939ENSMUSG00000026525ENSMUST00000027809ENSMUSG00000078185ENSMUST00000104984
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AJ_0001ENSG00000054277ENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673ENSG00000162843ENST00000366552ENST00000414635ENST00000425826ENST00000437684ENST00000461971ENST00000472717ENST00000478331ENST00000496914ENSG00000203668ENST00000366553CIL_0003AJ_0002ENSMUSG00000026523ENSMUST00000094288ENSMUST00000171939ENSMUSG00000026525ENSMUST00000027809ENSMUSG00000078185ENSMUST00000104984
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054277 ENST00000366554 1.005±0.00 1.505±0.00 N/A 3.780±0.18 1.388±0.00 1.093±0.11 0.477±0.35 4.431±1.02 3.583±0.00 2.368±0.39 N/A 1.713±0.97 13.476±2.96 1.517±0.62
ENST00000462265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.350±0.00
ENST00000463155 N/A N/A N/A N/A N/A 1.257±0.00 0.395±0.00 N/A N/A N/A 1.557±0.00 N/A N/A N/A
ENST00000469376 N/A N/A N/A N/A 1.521±0.00 0.861±0.00 0.595±0.00 N/A N/A 5.232±0.00 0.415±0.00 N/A 8.992±0.47 N/A
ENST00000478849 N/A N/A N/A N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A N/A N/A
ENST00000490673 3.052±0.00 2.536±0.00 N/A 6.128±0.00 1.147±0.00 1.325±0.14 0.639±0.51 8.826±0.00 2.927±2.45 1.837±0.12 N/A 2.667±1.50 15.147±1.05 2.996±1.20
ENSG00000162843 ENST00000366552 N/A N/A 0.056±0.00 0.034±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.015±0.00 0.037±0.00 N/A
ENST00000414635 N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.121±0.07 1.096±0.63
ENST00000425826 0.005±0.00 0.112±0.00 N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.058±0.00 0.115±0.10 1.051±0.74
ENST00000437684 N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A
ENST00000461971 N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.360±0.00
ENST00000472717 N/A N/A N/A 0.021±0.00 0.028±0.00 0.063±0.00 N/A N/A N/A 0.189±0.00 N/A N/A N/A 1.063±0.00
ENST00000478331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A
ENST00000496914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A
ENSG00000203668 ENST00000366553 1.187±0.00 0.638±0.00 0.995±0.00 1.550±0.35 1.531±0.87 1.769±0.52 0.944±0.15 1.108±0.11 0.870±0.64 2.069±1.54 0.538±0.07 1.735±0.27 2.052±1.17 2.666±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026523 ENSMUST00000094288 N/A N/A 0.001±0.00 0.006±0.00 N/A N/A 0.006±0.00 0.002±0.00 0.011±0.00 N/A 0.006±0.00 N/A 0.016±0.01 25.365±10.69
ENSMUST00000171939 0.009±0.00 N/A 0.001±0.00 0.011±0.00 N/A N/A 0.022±0.02 0.020±0.02 N/A N/A 0.006±0.00 N/A 0.003±0.00 N/A
ENSMUSG00000026525 ENSMUST00000027809 15.948±8.46 7.100±5.63 0.664±0.05 1.169±0.33 10.069±1.22 1.712±1.18 1.157±0.38 0.964±0.25 0.591±0.34 1.162±0.57 0.190±0.11 3.610±1.16 3.590±3.31 4.336±2.24
ENSMUSG00000078185 ENSMUST00000104984 1.484±0.17 0.405±0.16 N/A 2.654±0.00 1.050±0.16 1.010±0.41 0.633±0.13 0.465±0.10 0.232±0.21 0.970±0.00 0.159±0.07 1.412±0.62 2.149±1.08 2.126±0.18

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